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Ostreococcus tauri


Gene ID
Ot03g03190
Locus
Ot03g03190
Functional Description
beta amylase 2 (IC)
Gene Type
protein-coding gene
Contig
chrom03
Last Modified On
08 March 2010 23h10
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
beta amylase 2 (IC)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
catalytic activity

2.
beta-amylase activity

3.
cation binding

Biological Process
1.
polysaccharide catabolic process

2.
carbohydrate metabolic process

Protein Domains 


Domain IDDescriptionDatabase
IPR001554 Glycoside hydrolase, family 14 InterPro
IPR017853 Glycoside hydrolase, catalytic core InterPro
IPR013781 Glycoside hydrolase, subgroup, catalytic core InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL52970.1 beta amylase 2 (IC) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 743
Identities = 365/365 (100%), Positives = 365/365 (100%), Gaps = 0/365 (0%)
NCBI
Show Blast
XP_001416970.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-146 | Bitscore: 523
Identities = 245/285 (85%), Positives = 262/285 (91%), Gaps = 3/285 (1%)
NCBI
Show Blast
XP_002501612.1 glycoside hydrolase family 14 protein [Micromonas sp. RCC299]
Evalue: 3e-104 | Bitscore: 382
Identities = 180/258 (69%), Positives = 206/258 (79%), Gaps = 3/258 (1%)
NCBI
Show Blast
EEH53366.1 glycoside hydrolase family 14 protein [Micromonas pusilla CCMP1545]
Evalue: 1e-101 | Bitscore: 374
Identities = 176/256 (68%), Positives = 200/256 (78%), Gaps = 2/256 (0%)
NCBI
Show Blast
EAD08640.1 unknown [environmental sequence]
Evalue: 1e-102 | Bitscore: 371
Identities = 169/205 (82%), Positives = 185/205 (90%), Gaps = 1/205 (0%)
GOS
Show Blast
EAD82603.1 unknown [environmental sequence]
Evalue: 7e-74 | Bitscore: 277
Identities = 128/173 (73%), Positives = 144/173 (83%), Gaps = 4/173 (2%)
GOS
Show Blast
AAY89374.1 beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae]
Evalue: 1e-64 | Bitscore: 251
Identities = 121/250 (48%), Positives = 160/250 (64%), Gaps = 12/250 (4%)
NCBI
Show Blast
XP_002314522.1 predicted protein [Populus trichocarpa]
Evalue: 1e-62 | Bitscore: 244
Identities = 121/254 (47%), Positives = 157/254 (61%), Gaps = 20/254 (7%)
NCBI
Show Blast
CAN71375.1 hypothetical protein [Vitis vinifera]
Evalue: 3e-62 | Bitscore: 243
Identities = 119/254 (46%), Positives = 158/254 (62%), Gaps = 22/254 (8%)
NCBI
Show Blast
XP_002285569.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 4e-62 | Bitscore: 243
Identities = 119/254 (46%), Positives = 158/254 (62%), Gaps = 22/254 (8%)
NCBI
Show Blast

Gene Structure 

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Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT03G03190
Redo Blast
CDS Length
1098 nucleotides
CDS Sequence

Protein 

Locus ID
OT03G03190
Redo Blast
Protein Length
366 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDOtEST00399 Support ModelY More Info