- Gene ID
- Ot03g02140
- Locus
- Ot03g02140
- Functional Description
- Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom03
- Last Modified On
- 08 March 2010 22h54
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
3'-5'-exoribonuclease activity
2.
RNA binding
- Biological Process
-
1.
RNA processing
Protein Domains
| Domain ID | Description | Database |
|---|
|
PTHR11953 |
RIBONUCLEASE PH RELATED |
HMMPanther |
|
IPR015847 |
Exoribonuclease, phosphorolytic domain 2 |
InterPro |
|
IPR001247 |
Exoribonuclease, phosphorolytic domain 1 |
InterPro |
|
IPR020568 |
Ribosomal protein S5 domain 2-type fold |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52866.1 |
Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases (ISS) [Ostreococcus tauri]
Evalue: 8e-172 | Bitscore: 607
Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%) |
NCBI |
Show Blast
|
| XP_001416919.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-91 | Bitscore: 340
Identities = 178/256 (69%), Positives = 213/256 (83%), Gaps = 3/256 (1%) |
NCBI |
Show Blast
|
| EAD93215.1 |
unknown [environmental sequence]
Evalue: 8e-75 | Bitscore: 280
Identities = 150/235 (63%), Positives = 178/235 (75%), Gaps = 1/235 (0%) |
GOS |
Show Blast
|
| XP_001775388.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-17 | Bitscore: 94
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 12/227 (5%) |
NCBI |
Show Blast
|
| CAK04297.1 |
novel protein similar to mouse and human exosome component 5 (EXOSC5) [Danio rerio]
Evalue: 3e-17 | Bitscore: 94
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 5/213 (2%) |
NCBI |
Show Blast
|
| NP_001038817.1 |
exosome component 5 isoform 1 [Danio rerio]
Evalue: 2e-16 | Bitscore: 90
Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 5/213 (2%) |
NCBI |
Show Blast
|
| BAG37447.1 |
unnamed protein product [Homo sapiens]
Evalue: 3e-14 | Bitscore: 83
Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 19/174 (10%) |
NCBI |
Show Blast
|
| AAM75154.1 |
chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| pdb|2NN6|D |
Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| NP_064543.3 |
exosome complex exonuclease RRP46 [Homo sapiens] sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex exonuclease RRP46; AltName: Full=Ribosomal
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD93215.1 |
unknown [environmental sequence]
Evalue: 8e-75 | Bitscore: 280
Identities = 150/235 (63%), Positives = 178/235 (75%), Gaps = 1/235 (0%) |
GOS |
Show Blast
|
| EAK45419.1 |
unknown [environmental sequence]
Evalue: 5e-08 | Bitscore: 58
Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 15/227 (6%) |
GOS |
Show Blast
|
| EAK51676.1 |
unknown [environmental sequence]
Evalue: 6e-08 | Bitscore: 58
Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 15/227 (6%) |
GOS |
Show Blast
|
| EAC98717.1 |
unknown [environmental sequence]
Evalue: 4e-07 | Bitscore: 55
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 10/170 (5%) |
GOS |
Show Blast
|
| EAI26719.1 |
unknown [environmental sequence]
Evalue: 1e-06 | Bitscore: 53
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 15/222 (6%) |
GOS |
Show Blast
|
| EAB46164.1 |
unknown [environmental sequence]
Evalue: 8e-06 | Bitscore: 51
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 12/159 (7%) |
GOS |
Show Blast
|
| EAD66845.1 |
unknown [environmental sequence]
Evalue: 1e-05 | Bitscore: 50
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 11/166 (6%) |
GOS |
Show Blast
|
| EAD29856.1 |
unknown [environmental sequence]
Evalue: 3e-05 | Bitscore: 49
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 6/136 (4%) |
GOS |
Show Blast
|
| EAH55939.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 48
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 11/171 (6%) |
GOS |
Show Blast
|
| EAB68318.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 48
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 11/171 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52866.1 |
Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases (ISS) [Ostreococcus tauri]
Evalue: 8e-172 | Bitscore: 607
Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%) |
NCBI |
Show Blast
|
| XP_001416919.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-91 | Bitscore: 340
Identities = 178/256 (69%), Positives = 213/256 (83%), Gaps = 3/256 (1%) |
NCBI |
Show Blast
|
| XP_001775388.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-17 | Bitscore: 94
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 12/227 (5%) |
NCBI |
Show Blast
|
| CAK04297.1 |
novel protein similar to mouse and human exosome component 5 (EXOSC5) [Danio rerio]
Evalue: 3e-17 | Bitscore: 94
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 5/213 (2%) |
NCBI |
Show Blast
|
| NP_001038817.1 |
exosome component 5 isoform 1 [Danio rerio]
Evalue: 2e-16 | Bitscore: 90
Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 5/213 (2%) |
NCBI |
Show Blast
|
| BAG37447.1 |
unnamed protein product [Homo sapiens]
Evalue: 3e-14 | Bitscore: 83
Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 19/174 (10%) |
NCBI |
Show Blast
|
| AAM75154.1 |
chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| pdb|2NN6|D |
Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| NP_064543.3 |
exosome complex exonuclease RRP46 [Homo sapiens] sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex exonuclease RRP46; AltName: Full=Ribosomal
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| AAH07742.1 |
Exosome component 5 [Homo sapiens]
Evalue: 7e-14 | Bitscore: 82
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot04g02250 |
chrom04.0001 [341676..342807,342851..343800]
Evalue: 5e-05 | Bitscore: 43
Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 26/210 (12%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9NQT4 |
Exosome complex exonuclease RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Evalue: 5e-14 | Bitscore: 79
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 5/208 (2%) |
SwissP |
Show Blast
|
| Q9CRA8 |
Exosome complex exonuclease RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Evalue: 1e-13 | Bitscore: 77
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 16/162 (9%) |
SwissP |
Show Blast
|
| Q8U0L9 |
Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1
Evalue: 1e-10 | Bitscore: 67
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 17/225 (7%) |
SwissP |
Show Blast
|
| B6YSI2 |
Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1
Evalue: 2e-10 | Bitscore: 67
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 17/225 (7%) |
SwissP |
Show Blast
|
| Q9V119 |
Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1
Evalue: 3e-10 | Bitscore: 66
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 17/225 (7%) |
SwissP |
Show Blast
|
| Q5JIR6 |
Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1
Evalue: 4e-10 | Bitscore: 66
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%) |
SwissP |
Show Blast
|
| C5A2B9 |
Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Evalue: 2e-09 | Bitscore: 63
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 17/225 (7%) |
SwissP |
Show Blast
|
| O59223 |
Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1
Evalue: 3e-09 | Bitscore: 62
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 29/231 (12%) |
SwissP |
Show Blast
|
| Q17533 |
Putative exosome complex exonuclease RRP41 OS=Caenorhabditis elegans GN=exos-4.1 PE=2 SV=2
Evalue: 1e-08 | Bitscore: 61
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 23/218 (10%) |
SwissP |
Show Blast
|
| O29757 |
Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus GN=AF_0493 PE=1 SV=1
Evalue: 1e-08 | Bitscore: 60
Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 14/231 (6%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G46210.2 |
| Symbols: | 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE
Evalue: 7e-10 | Bitscore: 61
Identities = 46/161 (28%), Positives = 67/161 (41%) |
Tair |
Show Blast
|
| AT3G46210.5 |
| Symbols: | 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE
Evalue: 7e-10 | Bitscore: 61
Identities = 46/161 (28%), Positives = 67/161 (41%) |
Tair |
Show Blast
|
| AT3G46210.4 |
| Symbols: | 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE
Evalue: 7e-10 | Bitscore: 61
Identities = 46/161 (28%), Positives = 67/161 (41%) |
Tair |
Show Blast
|
| AT3G46210.3 |
| Symbols: | 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE
Evalue: 7e-10 | Bitscore: 61
Identities = 46/161 (28%), Positives = 67/161 (41%) |
Tair |
Show Blast
|
| AT3G46210.1 |
| Symbols: | 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE
Evalue: 7e-10 | Bitscore: 61
Identities = 46/161 (28%), Positives = 67/161 (41%) |
Tair |
Show Blast
|
| AT4G27490.1 |
| Symbols: | 3' exoribonuclease family domain 1-containing protein | chr4:13739967-13741653 FORWARD
Evalue: 4e-09 | Bitscore: 59
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 13/223 (5%) |
Tair |
Show Blast
|
| AT3G61620.2 |
| Symbols: RRP41 | RRP41 (Ribosomal RNA Processing 41) | chr3:22812357-22813885 REVERSE
Evalue: 2e-06 | Bitscore: 50
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%) |
Tair |
Show Blast
|
| AT3G61620.1 |
| Symbols: RRP41 | RRP41 (Ribosomal RNA Processing 41); 3'-5'-exoribonuclease/ RNA binding |
Evalue: 2e-06 | Bitscore: 50
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CTZ23-D10.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 220030..220057,443870..444477 |
Strand + |
|
