- Gene ID
- Ot02g06980
- Locus
- Ot02g06980
- Functional Description
- putative chloroplast-targeted beta-amylase (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 22h07
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative chloroplast-targeted beta-amylase (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
catalytic activity
2.
beta-amylase activity
3.
cation binding
- Biological Process
-
1.
polysaccharide catabolic process
2.
carbohydrate metabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR001554 |
Glycoside hydrolase, family 14 |
InterPro |
|
IPR017853 |
Glycoside hydrolase, catalytic core |
InterPro |
|
IPR013781 |
Glycoside hydrolase, subgroup, catalytic core |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52573.1 |
putative chloroplast-targeted beta-amylase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 883
Identities = 444/444 (100%), Positives = 444/444 (100%), Gaps = 0/444 (0%) |
NCBI |
Show Blast
|
| XP_001416297.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-127 | Bitscore: 461
Identities = 265/478 (55%), Positives = 289/478 (60%), Gaps = 92/478 (19%) |
NCBI |
Show Blast
|
| XP_001756520.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-65 | Bitscore: 253
Identities = 171/474 (36%), Positives = 220/474 (46%), Gaps = 100/474 (21%) |
NCBI |
Show Blast
|
| XP_001778149.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-65 | Bitscore: 252
Identities = 171/474 (36%), Positives = 222/474 (46%), Gaps = 100/474 (21%) |
NCBI |
Show Blast
|
| XP_002282871.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-63 | Bitscore: 248
Identities = 169/473 (35%), Positives = 217/473 (45%), Gaps = 107/473 (22%) |
NCBI |
Show Blast
|
| XP_001782016.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-63 | Bitscore: 248
Identities = 168/476 (35%), Positives = 215/476 (45%), Gaps = 104/476 (21%) |
NCBI |
Show Blast
|
| CAN62440.1 |
hypothetical protein [Vitis vinifera]
Evalue: 3e-62 | Bitscore: 243
Identities = 167/473 (35%), Positives = 216/473 (45%), Gaps = 107/473 (22%) |
NCBI |
Show Blast
|
| CAI39244.1 |
beta-amylase [Glycine max]
Evalue: 7e-62 | Bitscore: 242
Identities = 167/473 (35%), Positives = 216/473 (45%), Gaps = 107/473 (22%) |
NCBI |
Show Blast
|
| EAY88485.1 |
hypothetical protein OsI_09956 [Oryza sativa Indica Group]
Evalue: 1e-61 | Bitscore: 241
Identities = 170/477 (35%), Positives = 214/477 (44%), Gaps = 113/477 (23%) |
NCBI |
Show Blast
|
| NP_001048926.1 |
Os03g0141200 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-61 | Bitscore: 241
Identities = 170/477 (35%), Positives = 214/477 (44%), Gaps = 113/477 (23%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC75085.1 |
unknown [environmental sequence]
Evalue: 4e-61 | Bitscore: 235
Identities = 131/220 (59%), Positives = 149/220 (67%), Gaps = 9/220 (4%) |
GOS |
Show Blast
|
| EAD82603.1 |
unknown [environmental sequence]
Evalue: 5e-27 | Bitscore: 122
Identities = 88/260 (33%), Positives = 110/260 (42%), Gaps = 61/260 (23%) |
GOS |
Show Blast
|
| EAD08640.1 |
unknown [environmental sequence]
Evalue: 2e-19 | Bitscore: 97
Identities = 69/213 (32%), Positives = 87/213 (40%), Gaps = 42/213 (19%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52573.1 |
putative chloroplast-targeted beta-amylase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 883
Identities = 444/444 (100%), Positives = 444/444 (100%), Gaps = 0/444 (0%) |
NCBI |
Show Blast
|
| XP_001416297.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-127 | Bitscore: 461
Identities = 265/478 (55%), Positives = 289/478 (60%), Gaps = 92/478 (19%) |
NCBI |
Show Blast
|
| XP_001756520.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-65 | Bitscore: 253
Identities = 171/474 (36%), Positives = 220/474 (46%), Gaps = 100/474 (21%) |
NCBI |
Show Blast
|
| XP_001778149.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-65 | Bitscore: 252
Identities = 171/474 (36%), Positives = 222/474 (46%), Gaps = 100/474 (21%) |
NCBI |
Show Blast
|
| XP_002282871.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-63 | Bitscore: 248
Identities = 169/473 (35%), Positives = 217/473 (45%), Gaps = 107/473 (22%) |
NCBI |
Show Blast
|
| XP_001782016.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-63 | Bitscore: 248
Identities = 168/476 (35%), Positives = 215/476 (45%), Gaps = 104/476 (21%) |
NCBI |
Show Blast
|
| CAN62440.1 |
hypothetical protein [Vitis vinifera]
Evalue: 3e-62 | Bitscore: 243
Identities = 167/473 (35%), Positives = 216/473 (45%), Gaps = 107/473 (22%) |
NCBI |
Show Blast
|
| CAI39244.1 |
beta-amylase [Glycine max]
Evalue: 7e-62 | Bitscore: 242
Identities = 167/473 (35%), Positives = 216/473 (45%), Gaps = 107/473 (22%) |
NCBI |
Show Blast
|
| EAY88485.1 |
hypothetical protein OsI_09956 [Oryza sativa Indica Group]
Evalue: 1e-61 | Bitscore: 241
Identities = 170/477 (35%), Positives = 214/477 (44%), Gaps = 113/477 (23%) |
NCBI |
Show Blast
|
| NP_001048926.1 |
Os03g0141200 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-61 | Bitscore: 241
Identities = 170/477 (35%), Positives = 214/477 (44%), Gaps = 113/477 (23%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot03g03190 |
chrom03.0001 [509477..510574]
Evalue: 9e-24 | Bitscore: 106
Identities = 86/292 (29%), Positives = 116/292 (39%), Gaps = 55/292 (18%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P16098 |
Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1
Evalue: 1e-57 | Bitscore: 224
Identities = 150/469 (31%), Positives = 203/469 (43%), Gaps = 102/469 (21%) |
SwissP |
Show Blast
|
| P82993 |
Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1
Evalue: 2e-57 | Bitscore: 223
Identities = 149/471 (31%), Positives = 204/471 (43%), Gaps = 106/471 (22%) |
SwissP |
Show Blast
|
| P93594 |
Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1
Evalue: 7e-56 | Bitscore: 218
Identities = 143/469 (30%), Positives = 205/469 (43%), Gaps = 102/469 (21%) |
SwissP |
Show Blast
|
| P55005 |
Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1
Evalue: 9e-56 | Bitscore: 218
Identities = 146/470 (31%), Positives = 202/470 (42%), Gaps = 104/470 (22%) |
SwissP |
Show Blast
|
| P10537 |
Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4
Evalue: 3e-55 | Bitscore: 216
Identities = 150/468 (32%), Positives = 208/468 (44%), Gaps = 95/468 (20%) |
SwissP |
Show Blast
|
| P10538 |
Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3
Evalue: 1e-54 | Bitscore: 214
Identities = 142/471 (30%), Positives = 200/471 (42%), Gaps = 102/471 (21%) |
SwissP |
Show Blast
|
| O22585 |
Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1
Evalue: 8e-54 | Bitscore: 211
Identities = 138/471 (29%), Positives = 200/471 (42%), Gaps = 102/471 (21%) |
SwissP |
Show Blast
|
| O64407 |
Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1
Evalue: 1e-52 | Bitscore: 207
Identities = 135/471 (28%), Positives = 201/471 (42%), Gaps = 102/471 (21%) |
SwissP |
Show Blast
|
| O65015 |
Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1
Evalue: 3e-51 | Bitscore: 202
Identities = 135/471 (28%), Positives = 200/471 (42%), Gaps = 102/471 (21%) |
SwissP |
Show Blast
|
| P25853 |
Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1
Evalue: 1e-50 | Bitscore: 201
Identities = 137/469 (29%), Positives = 197/469 (42%), Gaps = 102/469 (21%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G17090.1 |
| Symbols: BMY8, BAM3, CT-BMY | CT-BMY (BETA-AMYLASE 3, BETA-AMYLASE 8); beta-amylase | chr4:9605282-9607266
Evalue: 9e-62 | Bitscore: 234
Identities = 163/474 (34%), Positives = 216/474 (45%), Gaps = 109/474 (22%) |
Tair |
Show Blast
|
| AT3G23920.1 |
| Symbols: BMY7, TR-BAMY, BAM1 | BAM1/BMY7/TR-BAMY (BETA-AMYLASE 1); beta-amylase | chr3:8641729-8644206 FORWARD
Evalue: 3e-58 | Bitscore: 223
Identities = 154/474 (32%), Positives = 208/474 (43%), Gaps = 101/474 (21%) |
Tair |
Show Blast
|
| AT2G32290.1 |
| Symbols: BMY5, BAM6 | BAM6/BMY5 (BETA-AMYLASE 6); beta-amylase | chr2:13721720-13723983 REVERSE
Evalue: 2e-57 | Bitscore: 219
Identities = 143/468 (30%), Positives = 203/468 (43%), Gaps = 105/468 (22%) |
Tair |
Show Blast
|
| AT4G00490.1 |
| Symbols: BMY9, BAM2 | BAM2/BMY9 (BETA-AMYLASE 2); beta-amylase | chr4:222422-224862 FORWARD
Evalue: 6e-54 | Bitscore: 208
Identities = 149/476 (31%), Positives = 206/476 (43%), Gaps = 114/476 (23%) |
Tair |
Show Blast
|
| AT4G15210.1 |
| Symbols: BMY1, BAM5, AT-BETA-AMY, RAM1, ATBETA-AMY | ATBETA-AMY (BETA-AMYLASE); beta-amylase | chr4:8666734-8669357
Evalue: 1e-51 | Bitscore: 201
Identities = 137/469 (29%), Positives = 197/469 (42%), Gaps = 102/469 (21%) |
Tair |
Show Blast
|
| AT4G15210.2 |
| Symbols: BMY1, BAM5, AT-BETA-AMY, RAM1, ATBETA-AMY | ATBETA-AMY (BETA-AMYLASE); beta-amylase | chr4:8666852-8669357
Evalue: 5e-49 | Bitscore: 192
Identities = 120/384 (31%), Positives = 174/384 (45%), Gaps = 63/384 (16%) |
Tair |
Show Blast
|
| AT2G45880.1 |
| Symbols: BMY4, BAM7 | BAM7/BMY4 (BETA-AMYLASE 7); beta-amylase | chr2:18885748-18888898 REVERSE
Evalue: 1e-46 | Bitscore: 184
Identities = 131/391 (33%), Positives = 178/391 (45%), Gaps = 67/391 (17%) |
Tair |
Show Blast
|
| AT5G45300.1 |
| Symbols: BMY2, BAM8 | BAM8/BMY2 (BETA-AMYLASE 8); beta-amylase | chr5:18370863-18373923 FORWARD
Evalue: 9e-44 | Bitscore: 174
Identities = 122/388 (31%), Positives = 179/388 (46%), Gaps = 67/388 (17%) |
Tair |
Show Blast
|
| AT5G45300.2 |
| Symbols: BMY2, BAM8 | BAM8/BMY2 (BETA-AMYLASE 8); beta-amylase | chr5:18370863-18373923 FORWARD
Evalue: 9e-44 | Bitscore: 174
Identities = 122/388 (31%), Positives = 179/388 (46%), Gaps = 67/388 (17%) |
Tair |
Show Blast
|
| AT5G55700.1 |
| Symbols: BMY6, BAM4 | BAM4/BMY6 (BETA-AMYLASE 4); beta-amylase | chr5:22569099-22571928 FORWARD
Evalue: 5e-39 | Bitscore: 159
Identities = 118/394 (29%), Positives = 169/394 (42%), Gaps = 72/394 (18%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
