- Gene ID
- Ot02g06480
- Locus
- Ot02g06480
- Functional Description
- ATP-binding cassette, sub-family D (ALD), member 3a (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 22h00
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- ATP-binding cassette, sub-family D (ALD), member 3a (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
ATP binding
2.
ATP hydrolysis activity
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
PTHR11384 |
ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
HMMPanther |
|
G3DSA:3.40.50.300 |
no description |
Gene3D |
|
IPR003593 |
ATPase, AAA+ type, core |
InterPro |
|
IPR003439 |
ABC transporter-like |
InterPro |
|
IPR010509 |
ABC transporter, N-terminal |
InterPro |
|
SSF52540 |
P-loop containing nucleoside triphosphate hydrolases |
superfamily |
|
IPR017871 |
ABC transporter, conserved site |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52523.1 |
ATP-binding cassette, sub-family D (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1387
Identities = 702/702 (100%), Positives = 702/702 (100%), Gaps = 0/702 (0%) |
NCBI |
Show Blast
|
| XP_001416078.1 |
ABC(ABCD) family transporter: long-chain fatty acid [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1019
Identities = 499/567 (88%), Positives = 531/567 (93%), Gaps = 0/567 (0%) |
NCBI |
Show Blast
|
| XP_002509410.1 |
ATP-binding cassette superfamily [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 780
Identities = 422/748 (56%), Positives = 517/748 (69%), Gaps = 83/748 (11%) |
NCBI |
Show Blast
|
| EEH53990.1 |
ATP-binding cassette superfamily [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 749
Identities = 376/598 (62%), Positives = 459/598 (76%), Gaps = 43/598 (7%) |
NCBI |
Show Blast
|
| EER17832.1 |
Proteases secretion ATP-binding protein prtD, putative [Perkinsus marinus ATCC 50983]
Evalue: 2e-126 | Bitscore: 457
Identities = 271/619 (43%), Positives = 363/619 (58%), Gaps = 51/619 (8%) |
NCBI |
Show Blast
|
| EAD86943.1 |
unknown [environmental sequence]
Evalue: 1e-112 | Bitscore: 405
Identities = 195/245 (79%), Positives = 216/245 (88%) |
GOS |
Show Blast
|
| XP_001762300.1 |
ATP-binding cassette transporter, subfamily D, member 1, group PMP protein PpABCD1 [Physcomitrella patens subsp. patens]
Evalue: 1e-107 | Bitscore: 395
Identities = 235/584 (40%), Positives = 337/584 (57%), Gaps = 56/584 (9%) |
NCBI |
Show Blast
|
| XP_002509314.1 |
ATP-binding cassette superfamily [Micromonas sp. RCC299]
Evalue: 3e-102 | Bitscore: 377
Identities = 227/601 (37%), Positives = 333/601 (55%), Gaps = 38/601 (6%) |
NCBI |
Show Blast
|
| XP_001420280.1 |
ABC(ABCD) family transporter: long-chain fatty acid (ALDP-like protein) [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-100 | Bitscore: 372
Identities = 224/585 (38%), Positives = 327/585 (55%), Gaps = 26/585 (4%) |
NCBI |
Show Blast
|
| XP_001459524.1 |
hypothetical protein [Paramecium tetraurelia strain d4-2]
Evalue: 2e-99 | Bitscore: 368
Identities = 216/610 (35%), Positives = 340/610 (55%), Gaps = 53/610 (8%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD86943.1 |
unknown [environmental sequence]
Evalue: 1e-112 | Bitscore: 405
Identities = 195/245 (79%), Positives = 216/245 (88%) |
GOS |
Show Blast
|
| EAJ30945.1 |
unknown [environmental sequence]
Evalue: 3e-82 | Bitscore: 306
Identities = 150/195 (76%), Positives = 169/195 (86%), Gaps = 1/195 (0%) |
GOS |
Show Blast
|
| EAI79226.1 |
unknown [environmental sequence]
Evalue: 9e-81 | Bitscore: 301
Identities = 172/444 (38%), Positives = 259/444 (58%), Gaps = 24/444 (5%) |
GOS |
Show Blast
|
| EAJ02609.1 |
unknown [environmental sequence]
Evalue: 3e-45 | Bitscore: 183
Identities = 138/495 (27%), Positives = 235/495 (47%), Gaps = 38/495 (7%) |
GOS |
Show Blast
|
| EAB54380.1 |
unknown [environmental sequence]
Evalue: 2e-39 | Bitscore: 164
Identities = 95/266 (35%), Positives = 145/266 (54%), Gaps = 21/266 (7%) |
GOS |
Show Blast
|
| EAD95792.1 |
unknown [environmental sequence]
Evalue: 1e-36 | Bitscore: 154
Identities = 80/125 (64%), Positives = 96/125 (76%), Gaps = 1/125 (0%) |
GOS |
Show Blast
|
| EAD14304.1 |
unknown [environmental sequence]
Evalue: 1e-35 | Bitscore: 151
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 12/198 (6%) |
GOS |
Show Blast
|
| EAG61105.1 |
unknown [environmental sequence]
Evalue: 2e-34 | Bitscore: 147
Identities = 91/261 (34%), Positives = 137/261 (52%), Gaps = 18/261 (6%) |
GOS |
Show Blast
|
| EAJ30739.1 |
unknown [environmental sequence]
Evalue: 1e-33 | Bitscore: 144
Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 13/203 (6%) |
GOS |
Show Blast
|
| EAG43741.1 |
unknown [environmental sequence]
Evalue: 1e-33 | Bitscore: 144
Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 13/211 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52523.1 |
ATP-binding cassette, sub-family D (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1387
Identities = 702/702 (100%), Positives = 702/702 (100%), Gaps = 0/702 (0%) |
NCBI |
Show Blast
|
| XP_001416078.1 |
ABC(ABCD) family transporter: long-chain fatty acid [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1019
Identities = 499/567 (88%), Positives = 531/567 (93%), Gaps = 0/567 (0%) |
NCBI |
Show Blast
|
| XP_002509410.1 |
ATP-binding cassette superfamily [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 780
Identities = 422/748 (56%), Positives = 517/748 (69%), Gaps = 83/748 (11%) |
NCBI |
Show Blast
|
| EEH53990.1 |
ATP-binding cassette superfamily [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 749
Identities = 376/598 (62%), Positives = 459/598 (76%), Gaps = 43/598 (7%) |
NCBI |
Show Blast
|
| EER17832.1 |
Proteases secretion ATP-binding protein prtD, putative [Perkinsus marinus ATCC 50983]
Evalue: 2e-126 | Bitscore: 457
Identities = 271/619 (43%), Positives = 363/619 (58%), Gaps = 51/619 (8%) |
NCBI |
Show Blast
|
| XP_001762300.1 |
ATP-binding cassette transporter, subfamily D, member 1, group PMP protein PpABCD1 [Physcomitrella patens subsp. patens]
Evalue: 1e-107 | Bitscore: 395
Identities = 235/584 (40%), Positives = 337/584 (57%), Gaps = 56/584 (9%) |
NCBI |
Show Blast
|
| XP_002509314.1 |
ATP-binding cassette superfamily [Micromonas sp. RCC299]
Evalue: 3e-102 | Bitscore: 377
Identities = 227/601 (37%), Positives = 333/601 (55%), Gaps = 38/601 (6%) |
NCBI |
Show Blast
|
| XP_001420280.1 |
ABC(ABCD) family transporter: long-chain fatty acid (ALDP-like protein) [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-100 | Bitscore: 372
Identities = 224/585 (38%), Positives = 327/585 (55%), Gaps = 26/585 (4%) |
NCBI |
Show Blast
|
| XP_001459524.1 |
hypothetical protein [Paramecium tetraurelia strain d4-2]
Evalue: 2e-99 | Bitscore: 368
Identities = 216/610 (35%), Positives = 340/610 (55%), Gaps = 53/610 (8%) |
NCBI |
Show Blast
|
| XP_001426319.1 |
hypothetical protein [Paramecium tetraurelia strain d4-2]
Evalue: 2e-99 | Bitscore: 368
Identities = 216/610 (35%), Positives = 340/610 (55%), Gaps = 53/610 (8%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot11g01220 |
chrom11.0001 [208083..210004,210048..210195]
Evalue: 8e-92 | Bitscore: 333
Identities = 212/587 (36%), Positives = 310/587 (52%), Gaps = 40/587 (6%) |
Self |
Show Blast
|
| Ot01g04530 |
chrom01.0001 [734778..735986,736028..738981,739013..739053, 739115..740126,740158..740213,740249..741942]
Evalue: 2e-17 | Bitscore: 86
Identities = 75/278 (26%), Positives = 119/278 (42%), Gaps = 63/278 (22%) |
Self |
Show Blast
|
| Ot13g03090 |
chrom13.0001 [512417..514459]
Evalue: 1e-15 | Bitscore: 80
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 24/230 (10%) |
Self |
Show Blast
|
| Ot01g00530 |
chrom01.0001 [77839..79084,79132..79751]
Evalue: 5e-15 | Bitscore: 78
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 7/204 (3%) |
Self |
Show Blast
|
| Ot13g00850 |
chrom13.0001 [136963..139083]
Evalue: 3e-14 | Bitscore: 75
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 12/207 (5%) |
Self |
Show Blast
|
| Ot03g00030 |
chrom03.0001 [5035..5488,5673..5992,6063..9721,9756..10320]
Evalue: 2e-13 | Bitscore: 72
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 7/190 (3%) |
Self |
Show Blast
|
| Ot07g01480 |
chrom07.0001 [210605..214249,214285..214722]
Evalue: 1e-12 | Bitscore: 70
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 22/207 (10%) |
Self |
Show Blast
|
| Ot07g02960 |
chrom07.0001 [470709..472523]
Evalue: 2e-11 | Bitscore: 66
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 5/175 (2%) |
Self |
Show Blast
|
| Ot09g03190 |
chrom09.0001 [475177..476874] incomplete
Evalue: 3e-10 | Bitscore: 62
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 44/224 (19%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P28288 |
ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1
Evalue: 4e-95 | Bitscore: 349
Identities = 205/609 (33%), Positives = 323/609 (53%), Gaps = 56/609 (9%) |
SwissP |
Show Blast
|
| P16970 |
ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3
Evalue: 5e-95 | Bitscore: 349
Identities = 202/612 (33%), Positives = 327/612 (53%), Gaps = 62/612 (10%) |
SwissP |
Show Blast
|
| P55096 |
ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=1
Evalue: 1e-93 | Bitscore: 344
Identities = 201/609 (33%), Positives = 322/609 (52%), Gaps = 56/609 (9%) |
SwissP |
Show Blast
|
| Q94FB9 |
ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1
Evalue: 6e-77 | Bitscore: 289
Identities = 175/526 (33%), Positives = 287/526 (54%), Gaps = 34/526 (6%) |
SwissP |
Show Blast
|
| P48410 |
ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1
Evalue: 2e-75 | Bitscore: 284
Identities = 193/636 (30%), Positives = 313/636 (49%), Gaps = 78/636 (12%) |
SwissP |
Show Blast
|
| P33897 |
ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2
Evalue: 1e-74 | Bitscore: 281
Identities = 192/636 (30%), Positives = 312/636 (49%), Gaps = 78/636 (12%) |
SwissP |
Show Blast
|
| Q9UBJ2 |
ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1
Evalue: 3e-74 | Bitscore: 280
Identities = 187/624 (29%), Positives = 306/624 (49%), Gaps = 69/624 (11%) |
SwissP |
Show Blast
|
| Q61285 |
ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1
Evalue: 7e-72 | Bitscore: 272
Identities = 183/625 (29%), Positives = 303/625 (48%), Gaps = 70/625 (11%) |
SwissP |
Show Blast
|
| Q9QY44 |
ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1
Evalue: 9e-72 | Bitscore: 271
Identities = 183/625 (29%), Positives = 303/625 (48%), Gaps = 70/625 (11%) |
SwissP |
Show Blast
|
| O14678 |
ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=2 SV=1
Evalue: 9e-68 | Bitscore: 258
Identities = 175/606 (28%), Positives = 299/606 (49%), Gaps = 52/606 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G39850.1 |
| Symbols: PED3, CTS, PXA1 | PXA1 (PEROXISOMAL ABC TRANSPORTER 1) | chr4:18489214-18496756 FORWARD
Evalue: 5e-78 | Bitscore: 289
Identities = 175/526 (33%), Positives = 287/526 (54%), Gaps = 34/526 (6%) |
Tair |
Show Blast
|
| AT1G54350.1 |
| Symbols: | ABC transporter family protein | chr1:20290584-20293912 FORWARD
Evalue: 1e-41 | Bitscore: 168
Identities = 148/566 (26%), Positives = 255/566 (45%), Gaps = 105/566 (18%) |
Tair |
Show Blast
|
| AT5G39040.1 |
| Symbols: ATTAP2 | ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2); ATPase,
Evalue: 3e-19 | Bitscore: 94
Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%) |
Tair |
Show Blast
|
| AT3G28860.1 |
| Symbols: ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19 | ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19);
Evalue: 2e-17 | Bitscore: 88
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 25/218 (11%) |
Tair |
Show Blast
|
| AT3G28390.1 |
| Symbols: PGP18 | PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances |
Evalue: 3e-17 | Bitscore: 87
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 22/193 (11%) |
Tair |
Show Blast
|
| AT5G03910.1 |
| Symbols: ATATH12 | ATATH12 (Arabidopsis ABC transporter homolog 12); ATPase, coupled to transmembrane movement of
Evalue: 4e-17 | Bitscore: 87
Identities = 80/265 (30%), Positives = 123/265 (46%), Gaps = 15/265 (5%) |
Tair |
Show Blast
|
| AT4G01830.1 |
| Symbols: PGP5 | PGP5 (P-GLYCOPROTEIN 5); ATPase, coupled to transmembrane movement of substances | chr4:785683-790447
Evalue: 2e-16 | Bitscore: 84
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 24/235 (10%) |
Tair |
Show Blast
|
| AT3G28360.1 |
| Symbols: PGP16 | PGP16 (P-GLYCOPROTEIN 16); ATPase, coupled to transmembrane movement of substances |
Evalue: 3e-16 | Bitscore: 84
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 22/193 (11%) |
Tair |
Show Blast
|
| AT3G28380.1 |
| Symbols: PGP17 | PGP17 (P-GLYCOPROTEIN 17); ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances /
Evalue: 6e-16 | Bitscore: 83
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 22/193 (11%) |
Tair |
Show Blast
|
| AT4G25960.1 |
| Symbols: PGP2 | PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances |
Evalue: 8e-16 | Bitscore: 82
Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 17/251 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
