- Gene ID
- Ot02g05720
- Locus
- Ot02g05720
- Functional Description
- PSI-associated light-harvesting chlorophyll a/b binding protein (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 21h47
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
| Sorry, only history comparison allowed for non logged in users!! |
Compare this version with :
Go! |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- PSI-associated light-harvesting chlorophyll a/b binding protein (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
membrane
- Molecular Function
-
n/a
- Biological Process
-
1.
photosynthesis, light harvesting
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF103511 |
Chlorophyll a-b binding protein |
superfamily |
|
PF00504 |
Chloroa_b-bind |
HMMPfam |
|
IPR001344 |
Chlorophyll A-B binding protein |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAY27540.1 |
chloroplast light-harvesting complex I protein precursor Lhca4 [Ostreococcus tauri]
Evalue: 2e-136 | Bitscore: 488
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%) |
NCBI |
Show Blast
|
| XP_001416356.1 |
Photosystem I light harvesting complex, chlorophyll a/b binding [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-100 | Bitscore: 369
Identities = 176/203 (86%), Positives = 188/203 (92%), Gaps = 1/203 (0%) |
NCBI |
Show Blast
|
| XP_002505087.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 2e-67 | Bitscore: 259
Identities = 126/219 (57%), Positives = 153/219 (69%), Gaps = 3/219 (1%) |
NCBI |
Show Blast
|
| XP_001419664.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-65 | Bitscore: 251
Identities = 128/233 (54%), Positives = 160/233 (68%), Gaps = 5/233 (2%) |
NCBI |
Show Blast
|
| XP_002507489.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 5e-64 | Bitscore: 248
Identities = 126/224 (56%), Positives = 153/224 (68%), Gaps = 9/224 (4%) |
NCBI |
Show Blast
|
| tpg|DAA05942.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca4 [Micromonas sp. CCMP490]
Evalue: 7e-64 | Bitscore: 247
Identities = 122/220 (55%), Positives = 152/220 (69%), Gaps = 4/220 (1%) |
NCBI |
Show Blast
|
| AAY27545.1 |
chloroplast light-harvesting complex I protein precursor Lhca2 [Ostreococcus tauri]
Evalue: 2e-63 | Bitscore: 246
Identities = 127/221 (57%), Positives = 155/221 (70%), Gaps = 7/221 (3%) |
NCBI |
Show Blast
|
| EEH59804.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 3e-62 | Bitscore: 241
Identities = 124/220 (56%), Positives = 150/220 (68%), Gaps = 6/220 (2%) |
NCBI |
Show Blast
|
| CAA55864.1 |
type II LHCI [Lolium temulentum]
Evalue: 2e-61 | Bitscore: 239
Identities = 119/219 (54%), Positives = 147/219 (67%), Gaps = 5/219 (2%) |
NCBI |
Show Blast
|
| CAA59049.1 |
LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp. vulgare]
Evalue: 3e-61 | Bitscore: 238
Identities = 119/230 (51%), Positives = 150/230 (65%), Gaps = 5/230 (2%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC81111.1 |
unknown [environmental sequence]
Evalue: 1e-23 | Bitscore: 109
Identities = 71/163 (43%), Positives = 89/163 (54%), Gaps = 14/163 (8%) |
GOS |
Show Blast
|
| EAJ62839.1 |
unknown [environmental sequence]
Evalue: 3e-14 | Bitscore: 78
Identities = 75/214 (35%), Positives = 99/214 (46%), Gaps = 32/214 (14%) |
GOS |
Show Blast
|
| EAE34011.1 |
unknown [environmental sequence]
Evalue: 6e-10 | Bitscore: 63
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 37/155 (23%) |
GOS |
Show Blast
|
| EAD09169.1 |
unknown [environmental sequence]
Evalue: 2e-08 | Bitscore: 58
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 39/166 (23%) |
GOS |
Show Blast
|
| EAD38361.1 |
unknown [environmental sequence]
Evalue: 0.0007 | Bitscore: 43
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAY27540.1 |
chloroplast light-harvesting complex I protein precursor Lhca4 [Ostreococcus tauri]
Evalue: 2e-136 | Bitscore: 488
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%) |
NCBI |
Show Blast
|
| XP_001416356.1 |
Photosystem I light harvesting complex, chlorophyll a/b binding [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-100 | Bitscore: 369
Identities = 176/203 (86%), Positives = 188/203 (92%), Gaps = 1/203 (0%) |
NCBI |
Show Blast
|
| XP_002505087.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 2e-67 | Bitscore: 259
Identities = 126/219 (57%), Positives = 153/219 (69%), Gaps = 3/219 (1%) |
NCBI |
Show Blast
|
| XP_001419664.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-65 | Bitscore: 251
Identities = 128/233 (54%), Positives = 160/233 (68%), Gaps = 5/233 (2%) |
NCBI |
Show Blast
|
| XP_002507489.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 5e-64 | Bitscore: 248
Identities = 126/224 (56%), Positives = 153/224 (68%), Gaps = 9/224 (4%) |
NCBI |
Show Blast
|
| tpg|DAA05942.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca4 [Micromonas sp. CCMP490]
Evalue: 7e-64 | Bitscore: 247
Identities = 122/220 (55%), Positives = 152/220 (69%), Gaps = 4/220 (1%) |
NCBI |
Show Blast
|
| AAY27545.1 |
chloroplast light-harvesting complex I protein precursor Lhca2 [Ostreococcus tauri]
Evalue: 2e-63 | Bitscore: 246
Identities = 127/221 (57%), Positives = 155/221 (70%), Gaps = 7/221 (3%) |
NCBI |
Show Blast
|
| EEH59804.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 3e-62 | Bitscore: 241
Identities = 124/220 (56%), Positives = 150/220 (68%), Gaps = 6/220 (2%) |
NCBI |
Show Blast
|
| CAA55864.1 |
type II LHCI [Lolium temulentum]
Evalue: 2e-61 | Bitscore: 239
Identities = 119/219 (54%), Positives = 147/219 (67%), Gaps = 5/219 (2%) |
NCBI |
Show Blast
|
| CAA59049.1 |
LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp. vulgare]
Evalue: 3e-61 | Bitscore: 238
Identities = 119/230 (51%), Positives = 150/230 (65%), Gaps = 5/230 (2%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot09g04370 |
chrom09.0001 [665721..666449]
Evalue: 1e-63 | Bitscore: 237
Identities = 127/221 (57%), Positives = 155/221 (70%), Gaps = 7/221 (3%) |
Self |
Show Blast
|
| Ot18g01370 |
chrom18.0001 [211282..211392,211687..212394]
Evalue: 1e-32 | Bitscore: 134
Identities = 89/203 (43%), Positives = 114/203 (56%), Gaps = 21/203 (10%) |
Self |
Show Blast
|
| Ot05g03910 |
chrom05.0001 [618438..618442,618725..619298] inframe stop codon
Evalue: 9e-25 | Bitscore: 108
Identities = 73/182 (40%), Positives = 93/182 (51%), Gaps = 22/182 (12%) |
Self |
Show Blast
|
| Ot11g01060 |
chrom11.0001 [188762..189850]
Evalue: 2e-22 | Bitscore: 100
Identities = 74/198 (37%), Positives = 98/198 (49%), Gaps = 30/198 (15%) |
Self |
Show Blast
|
| Ot14g01370 |
chrom14.0001 [192073..192355,192840..193507]
Evalue: 1e-20 | Bitscore: 94
Identities = 81/212 (38%), Positives = 102/212 (48%), Gaps = 36/212 (16%) |
Self |
Show Blast
|
| Ot03g04770 |
chrom03.0001 [783250..783821,783973..784042]
Evalue: 1e-16 | Bitscore: 81
Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 27/181 (14%) |
Self |
Show Blast
|
| Ot01g04850 |
chrom01.0001 [789392..790024,790190..790270,790350..790530,
Evalue: 3e-16 | Bitscore: 80
Identities = 67/190 (35%), Positives = 87/190 (45%), Gaps = 29/190 (15%) |
Self |
Show Blast
|
| Ot02g07190 |
chrom02.0001 [968674..969111] inframe stop codon incomplete
Evalue: 2e-13 | Bitscore: 70
Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 3/67 (4%) |
Self |
Show Blast
|
| Ot14g00810 |
chrom14.0001 [110814..114398,114437..114910]
Evalue: 8e-10 | Bitscore: 58
Identities = 59/167 (35%), Positives = 75/167 (44%), Gaps = 35/167 (20%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P27521 |
Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
Evalue: 3e-59 | Bitscore: 228
Identities = 105/195 (53%), Positives = 143/195 (73%), Gaps = 3/195 (1%) |
SwissP |
Show Blast
|
| P10708 |
Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
Evalue: 1e-57 | Bitscore: 223
Identities = 116/218 (53%), Positives = 145/218 (66%), Gaps = 6/218 (2%) |
SwissP |
Show Blast
|
| P13869 |
Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1
Evalue: 2e-57 | Bitscore: 222
Identities = 114/216 (52%), Positives = 146/216 (67%), Gaps = 9/216 (4%) |
SwissP |
Show Blast
|
| Q9SQL2 |
Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
Evalue: 6e-57 | Bitscore: 220
Identities = 103/195 (52%), Positives = 142/195 (72%), Gaps = 3/195 (1%) |
SwissP |
Show Blast
|
| Q36718 |
Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1
Evalue: 4e-51 | Bitscore: 201
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 6/216 (2%) |
SwissP |
Show Blast
|
| P27522 |
Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
Evalue: 2e-34 | Bitscore: 145
Identities = 102/257 (39%), Positives = 138/257 (53%), Gaps = 36/257 (14%) |
SwissP |
Show Blast
|
| Q32904 |
Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1
Evalue: 6e-33 | Bitscore: 140
Identities = 92/226 (40%), Positives = 127/226 (56%), Gaps = 36/226 (15%) |
SwissP |
Show Blast
|
| Q9SDM1 |
Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
Evalue: 2e-30 | Bitscore: 132
Identities = 88/242 (36%), Positives = 120/242 (49%), Gaps = 38/242 (15%) |
SwissP |
Show Blast
|
| P12360 |
Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
Evalue: 5e-28 | Bitscore: 124
Identities = 80/210 (38%), Positives = 104/210 (49%), Gaps = 27/210 (12%) |
SwissP |
Show Blast
|
| Q9XF89 |
Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1
Evalue: 1e-23 | Bitscore: 109
Identities = 79/196 (40%), Positives = 101/196 (51%), Gaps = 15/196 (7%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G47470.1 |
| Symbols: CAB4, LHCA4 | LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding |
Evalue: 3e-60 | Bitscore: 228
Identities = 105/195 (53%), Positives = 143/195 (73%), Gaps = 3/195 (1%) |
Tair |
Show Blast
|
| AT3G61470.1 |
| Symbols: LHCA2 | LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding | chr3:22756711-22758007
Evalue: 2e-58 | Bitscore: 221
Identities = 117/218 (53%), Positives = 146/218 (66%), Gaps = 9/218 (4%) |
Tair |
Show Blast
|
| AT1G19150.1 |
| Symbols: LHCA2*1, LHCA6 | LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding |
Evalue: 6e-52 | Bitscore: 200
Identities = 101/203 (49%), Positives = 134/203 (66%), Gaps = 5/203 (2%) |
Tair |
Show Blast
|
| AT1G45474.2 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 3e-43 | Bitscore: 171
Identities = 95/210 (45%), Positives = 126/210 (60%), Gaps = 6/210 (2%) |
Tair |
Show Blast
|
| AT1G45474.1 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 3e-43 | Bitscore: 171
Identities = 95/210 (45%), Positives = 126/210 (60%), Gaps = 6/210 (2%) |
Tair |
Show Blast
|
| AT1G61520.1 |
| Symbols: LHCA3 | LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding | chr1:22703817-22704814
Evalue: 3e-34 | Bitscore: 141
Identities = 94/226 (41%), Positives = 126/226 (55%), Gaps = 28/226 (12%) |
Tair |
Show Blast
|
| AT1G61520.2 |
| Symbols: LHCA3 | LHCA3 (Photosystem I light harvesting complex gene 3) | chr1:22704158-22704814 FORWARD
Evalue: 5e-31 | Bitscore: 130
Identities = 89/205 (43%), Positives = 115/205 (56%), Gaps = 28/205 (13%) |
Tair |
Show Blast
|
| AT3G54890.1 |
| Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3:20350684-20351900 REVERSE
Evalue: 2e-30 | Bitscore: 129
Identities = 81/203 (39%), Positives = 105/203 (51%), Gaps = 27/203 (13%) |
Tair |
Show Blast
|
| AT3G08940.2 |
| Symbols: LHCB4.2 | LHCB4.2 (LIGHT HARVESTING COMPLEX PSII) | chr3:2717722-2718670 FORWARD
Evalue: 2e-25 | Bitscore: 112
Identities = 83/261 (31%), Positives = 112/261 (42%), Gaps = 67/261 (25%) |
Tair |
Show Blast
|
| AT4G10340.1 |
| Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408196-6409492
Evalue: 1e-24 | Bitscore: 109
Identities = 79/196 (40%), Positives = 101/196 (51%), Gaps = 15/196 (7%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
