- Gene ID
- Ot02g03250
- Locus
- Ot02g03250
- Functional Description
- Rab1 small GTPase from the Rab subfamily (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 21h10
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Rab1 small GTPase from the Rab subfamily (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA binding
2.
ATP binding
3.
transcription factor binding
- Biological Process
-
1.
phosphorelay signal transduction system
2.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52204.1 |
Rab1 small GTPase from the Rab subfamily (IC) [Ostreococcus tauri]
Evalue: 3e-121 | Bitscore: 437
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%) |
NCBI |
Show Blast
|
| XP_001416217.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-83 | Bitscore: 312
Identities = 151/179 (84%), Positives = 164/179 (91%), Gaps = 1/179 (0%) |
NCBI |
Show Blast
|
| EEH59555.1 |
ras-related protein rab11a-like protein [Micromonas pusilla CCMP1545]
Evalue: 1e-77 | Bitscore: 293
Identities = 145/215 (67%), Positives = 169/215 (78%), Gaps = 3/215 (1%) |
NCBI |
Show Blast
|
| XP_002108851.1 |
conserved hypothetical protein [Trichoplax adhaerens]
Evalue: 5e-77 | Bitscore: 290
Identities = 139/212 (65%), Positives = 168/212 (79%), Gaps = 1/212 (0%) |
NCBI |
Show Blast
|
| XP_001691863.1 |
small rab-related GTPase [Chlamydomonas reinhardtii] sp|Q39572.1|YPTC6_CHLRE RecName: Full=Ras-related protein YPTC6
Evalue: 2e-75 | Bitscore: 285
Identities = 142/211 (67%), Positives = 169/211 (80%), Gaps = 5/211 (2%) |
NCBI |
Show Blast
|
| ACU23049.1 |
unknown [Glycine max]
Evalue: 3e-75 | Bitscore: 285
Identities = 134/210 (63%), Positives = 164/210 (78%), Gaps = 2/210 (0%) |
NCBI |
Show Blast
|
| XP_002526431.1 |
protein with unknown function [Ricinus communis]
Evalue: 4e-75 | Bitscore: 284
Identities = 137/211 (64%), Positives = 167/211 (79%), Gaps = 6/211 (2%) |
NCBI |
Show Blast
|
| ABR18090.1 |
unknown [Picea sitchensis]
Evalue: 1e-74 | Bitscore: 283
Identities = 139/210 (66%), Positives = 167/210 (79%), Gaps = 6/210 (2%) |
NCBI |
Show Blast
|
| NP_001131943.1 |
hypothetical protein LOC100193335 [Zea mays]
Evalue: 2e-74 | Bitscore: 282
Identities = 139/214 (64%), Positives = 170/214 (79%), Gaps = 7/214 (3%) |
NCBI |
Show Blast
|
| NP_172434.1 |
ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding [Arabidopsis thaliana]
Evalue: 2e-74 | Bitscore: 281
Identities = 136/211 (64%), Positives = 165/211 (78%), Gaps = 4/211 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD71502.1 |
unknown [environmental sequence]
Evalue: 1e-43 | Bitscore: 175
Identities = 92/161 (57%), Positives = 117/161 (72%), Gaps = 2/161 (1%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 9e-40 | Bitscore: 162
Identities = 91/200 (45%), Positives = 126/200 (63%), Gaps = 13/200 (6%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 6e-32 | Bitscore: 136
Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 14/195 (7%) |
GOS |
Show Blast
|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 1e-30 | Bitscore: 132
Identities = 61/145 (42%), Positives = 94/145 (64%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 3e-28 | Bitscore: 124
Identities = 57/155 (36%), Positives = 104/155 (67%), Gaps = 1/155 (0%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 3e-26 | Bitscore: 117
Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 3/203 (1%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 7e-25 | Bitscore: 113
Identities = 63/153 (41%), Positives = 93/153 (60%), Gaps = 3/153 (1%) |
GOS |
Show Blast
|
| EAD18748.1 |
unknown [environmental sequence]
Evalue: 4e-23 | Bitscore: 107
Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 5/133 (3%) |
GOS |
Show Blast
|
| EAK39351.1 |
unknown [environmental sequence]
Evalue: 1e-22 | Bitscore: 105
Identities = 57/169 (33%), Positives = 100/169 (59%), Gaps = 2/169 (1%) |
GOS |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 2e-22 | Bitscore: 105
Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 7/201 (3%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52204.1 |
Rab1 small GTPase from the Rab subfamily (IC) [Ostreococcus tauri]
Evalue: 3e-121 | Bitscore: 437
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%) |
NCBI |
Show Blast
|
| XP_001416217.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-83 | Bitscore: 312
Identities = 151/179 (84%), Positives = 164/179 (91%), Gaps = 1/179 (0%) |
NCBI |
Show Blast
|
| EEH59555.1 |
ras-related protein rab11a-like protein [Micromonas pusilla CCMP1545]
Evalue: 1e-77 | Bitscore: 293
Identities = 145/215 (67%), Positives = 169/215 (78%), Gaps = 3/215 (1%) |
NCBI |
Show Blast
|
| XP_002108851.1 |
conserved hypothetical protein [Trichoplax adhaerens]
Evalue: 5e-77 | Bitscore: 290
Identities = 139/212 (65%), Positives = 168/212 (79%), Gaps = 1/212 (0%) |
NCBI |
Show Blast
|
| XP_001691863.1 |
small rab-related GTPase [Chlamydomonas reinhardtii] sp|Q39572.1|YPTC6_CHLRE RecName: Full=Ras-related protein YPTC6
Evalue: 2e-75 | Bitscore: 285
Identities = 142/211 (67%), Positives = 169/211 (80%), Gaps = 5/211 (2%) |
NCBI |
Show Blast
|
| ACU23049.1 |
unknown [Glycine max]
Evalue: 3e-75 | Bitscore: 285
Identities = 134/210 (63%), Positives = 164/210 (78%), Gaps = 2/210 (0%) |
NCBI |
Show Blast
|
| XP_002526431.1 |
protein with unknown function [Ricinus communis]
Evalue: 4e-75 | Bitscore: 284
Identities = 137/211 (64%), Positives = 167/211 (79%), Gaps = 6/211 (2%) |
NCBI |
Show Blast
|
| ABR18090.1 |
unknown [Picea sitchensis]
Evalue: 1e-74 | Bitscore: 283
Identities = 139/210 (66%), Positives = 167/210 (79%), Gaps = 6/210 (2%) |
NCBI |
Show Blast
|
| NP_001131943.1 |
hypothetical protein LOC100193335 [Zea mays]
Evalue: 2e-74 | Bitscore: 282
Identities = 139/214 (64%), Positives = 170/214 (79%), Gaps = 7/214 (3%) |
NCBI |
Show Blast
|
| NP_172434.1 |
ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding [Arabidopsis thaliana]
Evalue: 2e-74 | Bitscore: 281
Identities = 136/211 (64%), Positives = 165/211 (78%), Gaps = 4/211 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 6e-43 | Bitscore: 168
Identities = 98/228 (42%), Positives = 135/228 (59%), Gaps = 32/228 (14%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 2e-33 | Bitscore: 137
Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 31/190 (16%) |
Self |
Show Blast
|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 2e-32 | Bitscore: 133
Identities = 69/163 (42%), Positives = 105/163 (64%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 2e-31 | Bitscore: 130
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 3/167 (1%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 8e-31 | Bitscore: 128
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%) |
Self |
Show Blast
|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 2e-24 | Bitscore: 107
Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 6/206 (2%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 8e-24 | Bitscore: 105
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 22/175 (12%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 2e-19 | Bitscore: 90
Identities = 52/147 (35%), Positives = 87/147 (59%), Gaps = 9/147 (6%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 6e-14 | Bitscore: 72
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 6/170 (3%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q39572 |
Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1
Evalue: 1e-71 | Bitscore: 269
Identities = 142/211 (67%), Positives = 169/211 (80%), Gaps = 5/211 (2%) |
SwissP |
Show Blast
|
| P46638 |
Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3
Evalue: 1e-69 | Bitscore: 262
Identities = 139/217 (64%), Positives = 164/217 (75%), Gaps = 4/217 (1%) |
SwissP |
Show Blast
|
| Q3MHP2 |
Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
Evalue: 4e-69 | Bitscore: 260
Identities = 138/215 (64%), Positives = 163/215 (75%), Gaps = 4/215 (1%) |
SwissP |
Show Blast
|
| Q15907 |
Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4
Evalue: 4e-69 | Bitscore: 260
Identities = 138/215 (64%), Positives = 163/215 (75%), Gaps = 4/215 (1%) |
SwissP |
Show Blast
|
| O35509 |
Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4
Evalue: 4e-69 | Bitscore: 260
Identities = 138/215 (64%), Positives = 163/215 (75%), Gaps = 4/215 (1%) |
SwissP |
Show Blast
|
| Q39434 |
Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Evalue: 7e-69 | Bitscore: 259
Identities = 129/207 (62%), Positives = 159/207 (76%) |
SwissP |
Show Blast
|
| O04486 |
Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1
Evalue: 2e-68 | Bitscore: 258
Identities = 136/211 (64%), Positives = 165/211 (78%), Gaps = 4/211 (1%) |
SwissP |
Show Blast
|
| P62493 |
Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3
Evalue: 3e-68 | Bitscore: 258
Identities = 134/214 (62%), Positives = 161/214 (75%), Gaps = 4/214 (1%) |
SwissP |
Show Blast
|
| P62494 |
Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3
Evalue: 3e-68 | Bitscore: 258
Identities = 134/214 (62%), Positives = 161/214 (75%), Gaps = 4/214 (1%) |
SwissP |
Show Blast
|
| Q5R9M7 |
Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3
Evalue: 3e-68 | Bitscore: 258
Identities = 134/214 (62%), Positives = 161/214 (75%), Gaps = 4/214 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G18430.1 |
| Symbols: AtRABA1e | AtRABA1e (Arabidopsis Rab GTPase homolog A1e); GTP binding | chr4:10183914-10185234 REVERSE
Evalue: 6e-70 | Bitscore: 259
Identities = 135/210 (64%), Positives = 166/210 (79%), Gaps = 4/210 (1%) |
Tair |
Show Blast
|
| AT4G18800.1 |
| Symbols: AthSGBP, AtRab11B, AtRABA1d | AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d); GTP binding |
Evalue: 2e-69 | Bitscore: 258
Identities = 136/207 (65%), Positives = 158/207 (76%), Gaps = 1/207 (0%) |
Tair |
Show Blast
|
| AT1G09630.1 |
| Symbols: ATRABA2A, ATRAB11C | ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding | chr1:3118352-3119573 REVERSE
Evalue: 2e-69 | Bitscore: 258
Identities = 136/211 (64%), Positives = 165/211 (78%), Gaps = 4/211 (1%) |
Tair |
Show Blast
|
| AT1G07410.1 |
| Symbols: AtRABA2b | AtRABA2b (Arabidopsis Rab GTPase homolog A2b); GTP binding | chr1:2276267-2277151 FORWARD
Evalue: 1e-68 | Bitscore: 255
Identities = 128/207 (61%), Positives = 157/207 (75%) |
Tair |
Show Blast
|
| AT5G59150.1 |
| Symbols: AtRABA2d | AtRABA2d (Arabidopsis Rab GTPase homolog A2d); GTP binding | chr5:23894084-23895470 FORWARD
Evalue: 4e-68 | Bitscore: 254
Identities = 130/210 (61%), Positives = 157/210 (74%), Gaps = 3/210 (1%) |
Tair |
Show Blast
|
| AT1G06400.1 |
| Symbols: AtRABA1a, AtRab11E, Ara-2, ARA2 | ARA2 (Arabidopsis Rab GTPase homolog A1a); GTP binding | chr1:1951088-1952685
Evalue: 4e-68 | Bitscore: 253
Identities = 127/208 (61%), Positives = 158/208 (75%), Gaps = 1/208 (0%) |
Tair |
Show Blast
|
| AT5G45750.1 |
| Symbols: AtRABA1c | AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding | chr5:18576545-18577866 FORWARD
Evalue: 5e-68 | Bitscore: 253
Identities = 134/208 (64%), Positives = 159/208 (76%), Gaps = 1/208 (0%) |
Tair |
Show Blast
|
| AT3G15060.1 |
| Symbols: AtRABA1g | AtRABA1g (Arabidopsis Rab GTPase homolog A1g); GTP binding | chr3:5069246-5070032 FORWARD
Evalue: 8e-68 | Bitscore: 253
Identities = 136/210 (64%), Positives = 160/210 (76%), Gaps = 2/210 (0%) |
Tair |
Show Blast
|
| AT5G60860.1 |
| Symbols: AtRABA1f | AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding | chr5:24501976-24502791 FORWARD
Evalue: 2e-67 | Bitscore: 251
Identities = 134/209 (64%), Positives = 159/209 (76%), Gaps = 2/209 (0%) |
Tair |
Show Blast
|
| AT1G28550.1 |
| Symbols: AtRABA1i | AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding | chr1:10036952-10037684 REVERSE
Evalue: 7e-67 | Bitscore: 249
Identities = 134/210 (63%), Positives = 159/210 (75%), Gaps = 3/210 (1%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST02014 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 336121..336889,336943..337101 |
Strand + |
| EST ID | OtEST02357 |
Support Model | N |
More Info |
| Comment | EST has one or more non matching splice site(s) EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 336532..336689,336740..336889,336943..338170 |
Strand - |
| EST ID | OtEST02691 |
Support Model | N |
More Info |
| Comment | EST has one or more non matching splice site(s) |
| Mapping Location | 336112..336315, 336366..336507, 336563..336689, 336740..336889, 336943..337037, 337093..337277 |
Strand + |
| EST ID | OtEST03040 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 336121..336889,336943..337101 |
Strand + |
| EST ID | OtEST03128 |
Support Model | N |
More Info |
| Comment | EST has one or more non matching splice site(s) EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 336532..336689,336740..336889,336943..338170 |
Strand - |
|
