- Gene ID
- Ot02g02140
- Locus
- Ot02g02140
- Functional Description
- Rpl35p ribosomal protein L35, chloroplast precursor (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 20h57
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
| Sorry, only history comparison allowed for non logged in users!! |
Compare this version with :
Go! |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Rpl35p ribosomal protein L35, chloroplast precursor (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
2.
ribosome
- Molecular Function
-
1.
structural constituent of ribosome
- Biological Process
-
1.
translation
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR001706 |
Ribosomal protein L35, non-mitochondrial |
InterPro |
|
IPR018265 |
Ribosomal protein L35, conserved site |
InterPro |
|
IPR021137 |
Ribosomal protein L35 |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52127.2 |
Rpl35p ribosomal protein L35, chloroplast precursor (IC) [Ostreococcus tauri]
Evalue: 2e-62 | Bitscore: 241
Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%) |
NCBI |
Show Blast
|
| XP_001416468.1 |
ribosomal protein L35, chloroplast precursor [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-21 | Bitscore: 103
Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 0/74 (0%) |
NCBI |
Show Blast
|
| EEH59295.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-20 | Bitscore: 99
Identities = 48/64 (75%), Positives = 53/64 (82%), Gaps = 0/64 (0%) |
NCBI |
Show Blast
|
| XP_002500912.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-17 | Bitscore: 92
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%) |
NCBI |
Show Blast
|
| CAA60774.1 |
ribosomal protein L35 [Arabidopsis thaliana]
Evalue: 3e-07 | Bitscore: 58
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%) |
NCBI |
Show Blast
|
| NP_850047.1 |
ribosomal protein L35 family protein [Arabidopsis thaliana]
Evalue: 3e-07 | Bitscore: 58
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%) |
NCBI |
Show Blast
|
| ACU14685.1 |
unknown [Glycine max]
Evalue: 3e-07 | Bitscore: 57
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 0/64 (0%) |
NCBI |
Show Blast
|
| AAP79180.1 |
ribosomal protein rpL35 [Bigelowiella natans]
Evalue: 5e-07 | Bitscore: 57
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 0/66 (0%) |
NCBI |
Show Blast
|
| CAD24038.1 |
putative plastid ribosomal protein L35 [Zea mays]
Evalue: 6e-07 | Bitscore: 57
Identities = 43/107 (40%), Positives = 53/107 (49%), Gaps = 6/107 (5%) |
NCBI |
Show Blast
|
| YP_002353201.1 |
ribosomal protein L35 [Dictyoglomus turgidum DSM 6724] sp|B8E0E2.1|RL35_DICTD RecName: Full=50S ribosomal protein L35
Evalue: 7e-07 | Bitscore: 56
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK47191.1 |
unknown [environmental sequence]
Evalue: 8e-06 | Bitscore: 49
Identities = 31/63 (49%), Positives = 39/63 (61%) |
GOS |
Show Blast
|
| EAC12699.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAE92970.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAF21172.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAH26613.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAK09598.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAK17402.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAJ38773.1 |
unknown [environmental sequence]
Evalue: 4e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAH97737.1 |
unknown [environmental sequence]
Evalue: 7e-05 | Bitscore: 46
Identities = 29/63 (46%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| EAD13440.1 |
unknown [environmental sequence]
Evalue: 9e-05 | Bitscore: 45
Identities = 29/63 (46%), Positives = 38/63 (60%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52127.2 |
Rpl35p ribosomal protein L35, chloroplast precursor (IC) [Ostreococcus tauri]
Evalue: 2e-62 | Bitscore: 241
Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%) |
NCBI |
Show Blast
|
| XP_001416468.1 |
ribosomal protein L35, chloroplast precursor [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-21 | Bitscore: 103
Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 0/74 (0%) |
NCBI |
Show Blast
|
| EEH59295.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-20 | Bitscore: 99
Identities = 48/64 (75%), Positives = 53/64 (82%), Gaps = 0/64 (0%) |
NCBI |
Show Blast
|
| XP_002500912.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-17 | Bitscore: 92
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%) |
NCBI |
Show Blast
|
| CAA60774.1 |
ribosomal protein L35 [Arabidopsis thaliana]
Evalue: 3e-07 | Bitscore: 58
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%) |
NCBI |
Show Blast
|
| NP_850047.1 |
ribosomal protein L35 family protein [Arabidopsis thaliana]
Evalue: 3e-07 | Bitscore: 58
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%) |
NCBI |
Show Blast
|
| ACU14685.1 |
unknown [Glycine max]
Evalue: 3e-07 | Bitscore: 57
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 0/64 (0%) |
NCBI |
Show Blast
|
| AAP79180.1 |
ribosomal protein rpL35 [Bigelowiella natans]
Evalue: 5e-07 | Bitscore: 57
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 0/66 (0%) |
NCBI |
Show Blast
|
| CAD24038.1 |
putative plastid ribosomal protein L35 [Zea mays]
Evalue: 6e-07 | Bitscore: 57
Identities = 43/107 (40%), Positives = 53/107 (49%), Gaps = 6/107 (5%) |
NCBI |
Show Blast
|
| YP_002353201.1 |
ribosomal protein L35 [Dictyoglomus turgidum DSM 6724] sp|B8E0E2.1|RL35_DICTD RecName: Full=50S ribosomal protein L35
Evalue: 7e-07 | Bitscore: 56
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| B8E0E2 |
50S ribosomal protein L35 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpmI PE=3 SV=1
Evalue: 7e-06 | Bitscore: 49
Identities = 29/62 (46%), Positives = 39/62 (62%) |
SwissP |
Show Blast
|
| P23326 |
50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1
Evalue: 9e-06 | Bitscore: 48
Identities = 31/70 (44%), Positives = 39/70 (55%) |
SwissP |
Show Blast
|
| Q2JR50 |
50S ribosomal protein L35 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmI PE=3 SV=1
Evalue: 2e-05 | Bitscore: 48
Identities = 30/61 (49%), Positives = 38/61 (62%) |
SwissP |
Show Blast
|
| B5YER8 |
50S ribosomal protein L35 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpmI PE=3 SV=1
Evalue: 2e-05 | Bitscore: 48
Identities = 29/62 (46%), Positives = 39/62 (62%) |
SwissP |
Show Blast
|
| Q2JI03 |
50S ribosomal protein L35 OS=Synechococcus sp. GN=rpmI PE=3 SV=1
Evalue: 2e-05 | Bitscore: 47
Identities = 30/61 (49%), Positives = 39/61 (63%) |
SwissP |
Show Blast
|
| Q7V9L2 |
50S ribosomal protein L35 OS=Prochlorococcus marinus GN=rpmI PE=3 SV=1
Evalue: 2e-05 | Bitscore: 47
Identities = 29/63 (46%), Positives = 39/63 (61%) |
SwissP |
Show Blast
|
| Q3B0U8 |
50S ribosomal protein L35 OS=Synechococcus sp. (strain CC9902) GN=rpmI PE=3 SV=1
Evalue: 3e-05 | Bitscore: 47
Identities = 27/63 (42%), Positives = 40/63 (63%) |
SwissP |
Show Blast
|
| B5YLD0 |
50S ribosomal protein L35 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rpmI PE=3 SV=1
Evalue: 3e-05 | Bitscore: 47
Identities = 27/62 (43%), Positives = 38/62 (61%) |
SwissP |
Show Blast
|
| A2BZ47 |
50S ribosomal protein L35 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmI PE=3 SV=1
Evalue: 3e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
SwissP |
Show Blast
|
| A2BTP2 |
50S ribosomal protein L35 OS=Prochlorococcus marinus (strain AS9601) GN=rpmI PE=3 SV=1
Evalue: 3e-05 | Bitscore: 47
Identities = 30/63 (47%), Positives = 38/63 (60%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT2G24090.1 |
| Symbols: | ribosomal protein L35 family protein | chr2:10249118-10250496 FORWARD
Evalue: 5e-07 | Bitscore: 49
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST02273 |
Support Model | N |
More Info |
| Comment | EST has one or more non matching splice site(s) |
| Mapping Location | 257746..257942,258061..258327 |
Strand - |
| EST ID | OtEST03109 |
Support Model | N |
More Info |
| Comment | EST has one or more non matching splice site(s) |
| Mapping Location | 257746..257942,258061..258327 |
Strand - |
|
