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Ostreococcus tauri


Gene ID
Ot02g00980
Locus
Ot02g00980
Functional Description
type I fatty acid synthase (ISS)
Gene Type
protein-coding gene
Contig
chrom02
Last Modified On
08 March 2010 20h51
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
type I fatty acid synthase (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR000794 Beta-ketoacyl synthase InterPro
IPR014031 Beta-ketoacyl synthase, C-terminal InterPro
IPR006163 Phosphopantetheine-binding InterPro
G3DSA:1.10.1200.10 no description Gene3D
IPR014030 Beta-ketoacyl synthase, N-terminal InterPro
IPR006162 Phosphopantetheine attachment site InterPro
IPR016038 Thiolase-like, subgroup InterPro
IPR018201 Beta-ketoacyl synthase, active site InterPro
IPR016039 Thiolase-like InterPro
IPR009081 Acyl carrier protein-like InterPro
IPR016040 NAD(P)-binding domain InterPro
IPR013968 Polyketide synthase, KR InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001416378.1 polyketide synthase [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1209
Identities = 775/1819 (42%), Positives = 1070/1819 (58%), Gaps = 93/1819 (5%)
NCBI
Show Blast
CAL52081.1 unnamed protein product [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 650
Identities = 298/313 (95%), Positives = 304/313 (97%), Gaps = 3/313 (0%)
NCBI
Show Blast
XP_002507643.1 modular polyketide synthase type I [Micromonas sp. RCC299]
Evalue: 7e-97 | Bitscore: 362
Identities = 297/838 (35%), Positives = 412/838 (49%), Gaps = 96/838 (11%)
NCBI
Show Blast
Ot02g01230 chrom02.0001 [192036..206291] incomplete
Evalue: 3e-97 | Bitscore: 354
Identities = 287/910 (31%), Positives = 435/910 (47%), Gaps = 86/910 (9%)
Self
Show Blast
CAL52581.1 type I fatty acid synthase (ISS) [Ostreococcus tauri]
Evalue: 2e-94 | Bitscore: 354
Identities = 272/821 (33%), Positives = 401/821 (48%), Gaps = 102/821 (12%)
NCBI
Show Blast
CAL52090.2 COG3321: Polyketide synthase modules and related proteins (ISS) [Ostreococcus tauri]
Evalue: 2e-94 | Bitscore: 354
Identities = 288/910 (31%), Positives = 440/910 (48%), Gaps = 86/910 (9%)
NCBI
Show Blast
Ot02g07060 chrom02.0001 [936749..938063,938095..943785,943862..951132] incomplete
Evalue: 1e-95 | Bitscore: 348
Identities = 268/817 (32%), Positives = 406/817 (49%), Gaps = 77/817 (9%)
Self
Show Blast
XP_001416048.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-86 | Bitscore: 328
Identities = 287/932 (30%), Positives = 435/932 (46%), Gaps = 82/932 (8%)
NCBI
Show Blast
XP_626786.1 type I fatty acid synthase [Cryptosporidium parvum Iowa II]
Evalue: 2e-86 | Bitscore: 328
Identities = 233/703 (33%), Positives = 349/703 (49%), Gaps = 66/703 (9%)
NCBI
Show Blast
AAC99407.1 type I fatty acid synthase [Cryptosporidium parvum]
Evalue: 9e-86 | Bitscore: 325
Identities = 231/703 (32%), Positives = 347/703 (49%), Gaps = 66/703 (9%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT02G00980
Redo Blast
CDS Length
17540 nucleotides
CDS Sequence

Protein 

Locus ID
OT02G00980
Redo Blast
Protein Length
4717 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDCH1_PKS Support ModelY More Info
EST IDOtEST01264 Support ModelY More Info
CommentEST is mapped on the opposite strand of the predicted model