- Gene ID
- Ot02g00210
- Locus
- Ot02g00210
- Functional Description
- CycA Cyclin A (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 20h41
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- CycA Cyclin A (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAV68599.1 |
cyclin A [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 733
Identities = 368/368 (100%), Positives = 368/368 (100%), Gaps = 0/368 (0%) |
NCBI |
Show Blast
|
| XP_001416424.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-68 | Bitscore: 261
Identities = 141/264 (53%), Positives = 187/264 (70%), Gaps = 17/264 (6%) |
NCBI |
Show Blast
|
| EEH59344.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-45 | Bitscore: 186
Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 27/316 (8%) |
NCBI |
Show Blast
|
| XP_002598359.1 |
hypothetical protein BRAFLDRAFT_69715 [Branchiostoma floridae]
Evalue: 2e-43 | Bitscore: 180
Identities = 94/223 (42%), Positives = 145/223 (65%), Gaps = 2/223 (0%) |
NCBI |
Show Blast
|
| BAC56853.1 |
cyclin A1 [Silene latifolia]
Evalue: 2e-41 | Bitscore: 174
Identities = 100/266 (37%), Positives = 157/266 (59%), Gaps = 15/266 (5%) |
NCBI |
Show Blast
|
| BAA14010.1 |
cyclin A [Asterina pectinifera]
Evalue: 2e-41 | Bitscore: 173
Identities = 89/222 (40%), Positives = 136/222 (61%), Gaps = 1/222 (0%) |
NCBI |
Show Blast
|
| NP_175077.1 |
CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator [Arabidopsis thaliana]
Evalue: 3e-41 | Bitscore: 173
Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 17/291 (5%) |
NCBI |
Show Blast
|
| XP_001766360.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 4e-41 | Bitscore: 172
Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 10/243 (4%) |
NCBI |
Show Blast
|
| AAH68323.2 |
Cyclin A2 [Danio rerio]
Evalue: 8e-41 | Bitscore: 172
Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 2/224 (0%) |
NCBI |
Show Blast
|
| NP_694481.1 |
cyclin A2 [Danio rerio]
Evalue: 8e-41 | Bitscore: 172
Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 2/224 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC28698.1 |
unknown [environmental sequence]
Evalue: 4e-20 | Bitscore: 98
Identities = 44/102 (43%), Positives = 70/102 (68%) |
GOS |
Show Blast
|
| EAC33467.1 |
unknown [environmental sequence]
Evalue: 2e-12 | Bitscore: 72
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 23/184 (12%) |
GOS |
Show Blast
|
| EAB27071.1 |
unknown [environmental sequence]
Evalue: 5e-05 | Bitscore: 48
Identities = 23/71 (32%), Positives = 42/71 (59%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAV68599.1 |
cyclin A [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 733
Identities = 368/368 (100%), Positives = 368/368 (100%), Gaps = 0/368 (0%) |
NCBI |
Show Blast
|
| XP_001416424.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-68 | Bitscore: 261
Identities = 141/264 (53%), Positives = 187/264 (70%), Gaps = 17/264 (6%) |
NCBI |
Show Blast
|
| EEH59344.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-45 | Bitscore: 186
Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 27/316 (8%) |
NCBI |
Show Blast
|
| XP_002598359.1 |
hypothetical protein BRAFLDRAFT_69715 [Branchiostoma floridae]
Evalue: 2e-43 | Bitscore: 180
Identities = 94/223 (42%), Positives = 145/223 (65%), Gaps = 2/223 (0%) |
NCBI |
Show Blast
|
| BAC56853.1 |
cyclin A1 [Silene latifolia]
Evalue: 2e-41 | Bitscore: 174
Identities = 100/266 (37%), Positives = 157/266 (59%), Gaps = 15/266 (5%) |
NCBI |
Show Blast
|
| BAA14010.1 |
cyclin A [Asterina pectinifera]
Evalue: 2e-41 | Bitscore: 173
Identities = 89/222 (40%), Positives = 136/222 (61%), Gaps = 1/222 (0%) |
NCBI |
Show Blast
|
| NP_175077.1 |
CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator [Arabidopsis thaliana]
Evalue: 3e-41 | Bitscore: 173
Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 17/291 (5%) |
NCBI |
Show Blast
|
| XP_001766360.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 4e-41 | Bitscore: 172
Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 10/243 (4%) |
NCBI |
Show Blast
|
| AAH68323.2 |
Cyclin A2 [Danio rerio]
Evalue: 8e-41 | Bitscore: 172
Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 2/224 (0%) |
NCBI |
Show Blast
|
| NP_694481.1 |
cyclin A2 [Danio rerio]
Evalue: 8e-41 | Bitscore: 172
Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 2/224 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot01g06030 |
chrom01.0001 [990823..991545,991615..991618,991671..992000,
Evalue: 8e-28 | Bitscore: 119
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 1/219 (0%) |
Self |
Show Blast
|
| Ot18g01690 |
chrom18.0001 [261211..261623,261814..261817,261869..262588]
Evalue: 3e-09 | Bitscore: 57
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 11/161 (6%) |
Self |
Show Blast
|
| Ot18g01430 |
chrom18.0001 [219325..219347,219385..220231]
Evalue: 8e-06 | Bitscore: 46
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 47/183 (25%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9C6Y3 |
Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1
Evalue: 8e-41 | Bitscore: 167
Identities = 104/282 (36%), Positives = 157/282 (55%), Gaps = 16/282 (5%) |
SwissP |
Show Blast
|
| Q0INT0 |
Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=3 SV=2
Evalue: 1e-39 | Bitscore: 164
Identities = 107/307 (34%), Positives = 169/307 (55%), Gaps = 16/307 (5%) |
SwissP |
Show Blast
|
| Q7F830 |
Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1
Evalue: 2e-39 | Bitscore: 163
Identities = 107/307 (34%), Positives = 169/307 (55%), Gaps = 16/307 (5%) |
SwissP |
Show Blast
|
| P78396 |
Cyclin-A1 OS=Homo sapiens GN=CCNA1 PE=1 SV=1
Evalue: 4e-39 | Bitscore: 162
Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 2/215 (0%) |
SwissP |
Show Blast
|
| P18606 |
Cyclin-A1 OS=Xenopus laevis GN=ccna1 PE=2 SV=1
Evalue: 1e-38 | Bitscore: 160
Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 4/223 (1%) |
SwissP |
Show Blast
|
| Q9C968 |
Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1
Evalue: 1e-38 | Bitscore: 160
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 18/246 (7%) |
SwissP |
Show Blast
|
| Q0JPA4 |
Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2
Evalue: 2e-38 | Bitscore: 159
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%) |
SwissP |
Show Blast
|
| Q6AY13 |
Cyclin-A1 OS=Rattus norvegicus GN=Ccna1 PE=2 SV=1
Evalue: 3e-38 | Bitscore: 159
Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 2/222 (0%) |
SwissP |
Show Blast
|
| Q0DJR9 |
Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYCA1-4 PE=2 SV=2
Evalue: 3e-38 | Bitscore: 159
Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 6/222 (2%) |
SwissP |
Show Blast
|
| Q61456 |
Cyclin-A1 OS=Mus musculus GN=Ccna1 PE=1 SV=2
Evalue: 3e-38 | Bitscore: 159
Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 2/222 (0%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G44110.1 |
| Symbols: CYCA1;1 | CYCA1;1 (CYCLIN A1;1); cyclin-dependent protein kinase regulator | chr1:16777475-16779622
Evalue: 7e-42 | Bitscore: 167
Identities = 104/282 (36%), Positives = 157/282 (55%), Gaps = 16/282 (5%) |
Tair |
Show Blast
|
| AT1G80370.1 |
| Symbols: CYCA2;4 | CYCA2;4 (CYCLIN A2;4); cyclin-dependent protein kinase regulator | chr1:30219586-30221753
Evalue: 1e-39 | Bitscore: 160
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 18/246 (7%) |
Tair |
Show Blast
|
| AT1G77390.1 |
| Symbols: CYCA1, CYCA1;2 | CYCA1;2 (CYCLIN A1;2); cyclin-dependent protein kinase regulator | chr1:29086798-29089031
Evalue: 4e-39 | Bitscore: 159
Identities = 96/262 (36%), Positives = 145/262 (55%), Gaps = 12/262 (4%) |
Tair |
Show Blast
|
| AT1G15570.1 |
| Symbols: CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator | chr1:5363029-5365213 FORWARD
Evalue: 7e-39 | Bitscore: 157
Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 19/299 (6%) |
Tair |
Show Blast
|
| AT5G25380.1 |
| Symbols: CYCA2;1 | CYCA2;1 (CYCLIN A2;1); cyclin-dependent protein kinase regulator | chr5:8815233-8817569 FORWARD
Evalue: 9e-38 | Bitscore: 154
Identities = 88/240 (36%), Positives = 137/240 (57%), Gaps = 9/240 (3%) |
Tair |
Show Blast
|
| AT5G43080.1 |
| Symbols: CYCA3;1 | CYCA3;1 (CYCLIN A3;1); cyclin-dependent protein kinase regulator | chr5:17310455-17312017
Evalue: 1e-35 | Bitscore: 147
Identities = 83/244 (34%), Positives = 137/244 (56%), Gaps = 14/244 (5%) |
Tair |
Show Blast
|
| AT5G11300.1 |
| Symbols: CYC2BAT, CYCA2;2, CYC3B | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS); cyclin-dependent protein kinase
Evalue: 2e-35 | Bitscore: 146
Identities = 90/284 (31%), Positives = 150/284 (52%), Gaps = 13/284 (4%) |
Tair |
Show Blast
|
| AT1G47210.2 |
| Symbols: CYCA3;2 | CYCA3;2; cyclin-dependent protein kinase | chr1:17303476-17305024 FORWARD
Evalue: 3e-34 | Bitscore: 142
Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 18/302 (5%) |
Tair |
Show Blast
|
| AT1G47220.1 |
| Symbols: CYCA3;3 | CYCA3;3 (CYCLIN A3;3); cyclin-dependent protein kinase regulator | chr1:17306116-17307637
Evalue: 7e-33 | Bitscore: 137
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 6/230 (2%) |
Tair |
Show Blast
|
| AT1G47230.1 |
| Symbols: CYCA3;4 | CYCA3;4; cyclin-dependent protein kinase regulator | chr1:17309192-17311027 FORWARD
Evalue: 3e-32 | Bitscore: 135
Identities = 77/237 (32%), Positives = 133/237 (56%), Gaps = 7/237 (2%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CH1a_CycA |
Support Model | Y |
More Info |
| Mapping Location | 26925..27947,28003..28083 |
Strand - |
| EST ID | OtEST02610 |
Support Model | Y |
More Info |
| Comment | EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 25531..25745,25795..27507 |
Strand + |
| EST ID | OtEST03174 |
Support Model | Y |
More Info |
| Comment | EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 25531..25745,25795..27507 |
Strand + |
| EST ID | OtEST03202 |
Support Model | Y |
More Info |
| Mapping Location | 26922..27947,28003..28083 |
Strand - |
| EST ID | CH1a_GR |
Support Model | N |
More Info |
| Comment | EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 25139..25264,25317..25745,25795..26805 |
Strand + |
|
