- Gene ID
- Ot01g05530
- Locus
- Ot01g05530
- Functional Description
- autophagy 8f (APG8f) (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom01
- Last Modified On
- 08 March 2010 20h19
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- autophagy 8f (APG8f) (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL50468.1 |
Microtubule-associated anchor protein involved in autophagy and membrane trafficking (ISS) [Ostreococcus tauri]
Evalue: 2e-83 | Bitscore: 310
Identities = 152/152 (100%), Positives = 152/152 (100%), Gaps = 0/152 (0%) |
NCBI |
Show Blast
|
| XP_001415651.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-51 | Bitscore: 202
Identities = 104/146 (71%), Positives = 109/146 (74%), Gaps = 28/146 (19%) |
NCBI |
Show Blast
|
| XP_002506884.1 |
autophagy-related protein 8 [Micromonas sp. RCC299]
Evalue: 5e-47 | Bitscore: 190
Identities = 95/128 (74%), Positives = 106/128 (82%), Gaps = 5/128 (3%) |
NCBI |
Show Blast
|
| ABK25196.1 |
unknown [Picea sitchensis]
Evalue: 6e-47 | Bitscore: 189
Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| XP_002525907.1 |
gaba(A) receptor-associated protein, putative [Ricinus communis]
Evalue: 2e-46 | Bitscore: 188
Identities = 90/107 (84%), Positives = 99/107 (92%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| ACU19559.1 |
unknown [Glycine max]
Evalue: 2e-46 | Bitscore: 188
Identities = 89/107 (83%), Positives = 100/107 (93%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| CAD33929.1 |
microtubule associated protein [Cicer arietinum]
Evalue: 2e-46 | Bitscore: 188
Identities = 89/107 (83%), Positives = 100/107 (93%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| NP_567504.1 |
ATG8F (autophagy 8f); microtubule binding [Arabidopsis thaliana]
Evalue: 2e-46 | Bitscore: 188
Identities = 89/108 (82%), Positives = 99/108 (91%), Gaps = 0/108 (0%) |
NCBI |
Show Blast
|
| XP_002303509.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-46 | Bitscore: 187
Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| XP_002529905.1 |
gaba(A) receptor-associated protein, putative [Ricinus communis]
Evalue: 4e-46 | Bitscore: 187
Identities = 87/104 (83%), Positives = 97/104 (93%), Gaps = 0/104 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD59302.1 |
unknown [environmental sequence]
Evalue: 9e-33 | Bitscore: 138
Identities = 66/73 (90%), Positives = 69/73 (94%) |
GOS |
Show Blast
|
| EAD89429.1 |
unknown [environmental sequence]
Evalue: 1e-31 | Bitscore: 134
Identities = 63/110 (57%), Positives = 86/110 (78%) |
GOS |
Show Blast
|
| EAF78500.1 |
unknown [environmental sequence]
Evalue: 2e-30 | Bitscore: 130
Identities = 64/97 (65%), Positives = 78/97 (80%) |
GOS |
Show Blast
|
| EAE32577.1 |
unknown [environmental sequence]
Evalue: 3e-26 | Bitscore: 117
Identities = 58/119 (48%), Positives = 80/119 (67%), Gaps = 5/119 (4%) |
GOS |
Show Blast
|
| EAC07468.1 |
unknown [environmental sequence]
Evalue: 2e-24 | Bitscore: 110
Identities = 50/105 (47%), Positives = 76/105 (72%) |
GOS |
Show Blast
|
| EAE16423.1 |
unknown [environmental sequence]
Evalue: 2e-24 | Bitscore: 110
Identities = 52/104 (50%), Positives = 70/104 (67%) |
GOS |
Show Blast
|
| EAD75148.1 |
unknown [environmental sequence]
Evalue: 2e-24 | Bitscore: 110
Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%) |
GOS |
Show Blast
|
| EAE84143.1 |
unknown [environmental sequence]
Evalue: 1e-19 | Bitscore: 95
Identities = 44/74 (59%), Positives = 57/74 (77%) |
GOS |
Show Blast
|
| EAE82786.1 |
unknown [environmental sequence]
Evalue: 6e-17 | Bitscore: 86
Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 2/72 (2%) |
GOS |
Show Blast
|
| EAG77077.1 |
unknown [environmental sequence]
Evalue: 1e-15 | Bitscore: 81
Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 6/97 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL50468.1 |
Microtubule-associated anchor protein involved in autophagy and membrane trafficking (ISS) [Ostreococcus tauri]
Evalue: 2e-83 | Bitscore: 310
Identities = 152/152 (100%), Positives = 152/152 (100%), Gaps = 0/152 (0%) |
NCBI |
Show Blast
|
| XP_001415651.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-51 | Bitscore: 202
Identities = 104/146 (71%), Positives = 109/146 (74%), Gaps = 28/146 (19%) |
NCBI |
Show Blast
|
| XP_002506884.1 |
autophagy-related protein 8 [Micromonas sp. RCC299]
Evalue: 5e-47 | Bitscore: 190
Identities = 95/128 (74%), Positives = 106/128 (82%), Gaps = 5/128 (3%) |
NCBI |
Show Blast
|
| ABK25196.1 |
unknown [Picea sitchensis]
Evalue: 6e-47 | Bitscore: 189
Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| XP_002525907.1 |
gaba(A) receptor-associated protein, putative [Ricinus communis]
Evalue: 2e-46 | Bitscore: 188
Identities = 90/107 (84%), Positives = 99/107 (92%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| ACU19559.1 |
unknown [Glycine max]
Evalue: 2e-46 | Bitscore: 188
Identities = 89/107 (83%), Positives = 100/107 (93%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| CAD33929.1 |
microtubule associated protein [Cicer arietinum]
Evalue: 2e-46 | Bitscore: 188
Identities = 89/107 (83%), Positives = 100/107 (93%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| NP_567504.1 |
ATG8F (autophagy 8f); microtubule binding [Arabidopsis thaliana]
Evalue: 2e-46 | Bitscore: 188
Identities = 89/108 (82%), Positives = 99/108 (91%), Gaps = 0/108 (0%) |
NCBI |
Show Blast
|
| XP_002303509.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-46 | Bitscore: 187
Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 0/107 (0%) |
NCBI |
Show Blast
|
| XP_002529905.1 |
gaba(A) receptor-associated protein, putative [Ricinus communis]
Evalue: 4e-46 | Bitscore: 187
Identities = 87/104 (83%), Positives = 97/104 (93%), Gaps = 0/104 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q8VYK7 |
Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1
Evalue: 1e-44 | Bitscore: 177
Identities = 89/108 (82%), Positives = 99/108 (91%) |
SwissP |
Show Blast
|
| Q9SL04 |
Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1
Evalue: 4e-44 | Bitscore: 176
Identities = 85/104 (81%), Positives = 96/104 (92%) |
SwissP |
Show Blast
|
| Q9LZZ9 |
Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1
Evalue: 2e-43 | Bitscore: 174
Identities = 86/107 (80%), Positives = 98/107 (91%) |
SwissP |
Show Blast
|
| Q8S926 |
Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1
Evalue: 6e-43 | Bitscore: 172
Identities = 86/107 (80%), Positives = 98/107 (91%) |
SwissP |
Show Blast
|
| Q8LEM4 |
Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2
Evalue: 6e-43 | Bitscore: 172
Identities = 84/103 (81%), Positives = 93/103 (90%) |
SwissP |
Show Blast
|
| Q8S927 |
Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1
Evalue: 1e-42 | Bitscore: 171
Identities = 83/105 (79%), Positives = 95/105 (90%) |
SwissP |
Show Blast
|
| Q6Z1D5 |
Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1
Evalue: 1e-42 | Bitscore: 171
Identities = 85/105 (80%), Positives = 95/105 (90%) |
SwissP |
Show Blast
|
| A2YS06 |
Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2
Evalue: 1e-42 | Bitscore: 171
Identities = 85/105 (80%), Positives = 95/105 (90%) |
SwissP |
Show Blast
|
| Q2XPP5 |
Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1
Evalue: 2e-42 | Bitscore: 171
Identities = 83/104 (79%), Positives = 96/104 (92%) |
SwissP |
Show Blast
|
| Q69RC4 |
Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1
Evalue: 2e-42 | Bitscore: 171
Identities = 83/104 (79%), Positives = 96/104 (92%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G16520.1 |
| Symbols: ATG8F | ATG8F (AUTOPHAGY 8F); microtubule binding | chr4:9306905-9308136 REVERSE
Evalue: 2e-45 | Bitscore: 177
Identities = 89/108 (82%), Positives = 99/108 (91%) |
Tair |
Show Blast
|
| AT4G16520.2 |
| Symbols: ATG8F | ATG8F (AUTOPHAGY 8F); microtubule binding | chr4:9306905-9308136 REVERSE
Evalue: 2e-45 | Bitscore: 177
Identities = 89/108 (82%), Positives = 99/108 (91%) |
Tair |
Show Blast
|
| AT2G05630.1 |
| Symbols: ATG8D | ATG8D (autophagy gene 8-related); microtubule binding | chr2:2083208-2084772 REVERSE
Evalue: 5e-45 | Bitscore: 176
Identities = 85/104 (81%), Positives = 96/104 (92%) |
Tair |
Show Blast
|
| AT3G60640.1 |
| Symbols: ATG8G | ATG8G (AUTOPHAGY 8G); microtubule binding | chr3:22427093-22427946 FORWARD
Evalue: 2e-44 | Bitscore: 174
Identities = 86/107 (80%), Positives = 98/107 (91%) |
Tair |
Show Blast
|
| AT4G21980.2 |
| Symbols: ATG8A, APG8A | APG8A (autophagy 8A) | chr4:11655880-11656821 FORWARD
Evalue: 2e-44 | Bitscore: 174
Identities = 84/103 (81%), Positives = 93/103 (90%) |
Tair |
Show Blast
|
| AT2G45170.2 |
| Symbols: ATG8E, AtATG8e | AtATG8e (AUTOPHAGY 8E); microtubule binding | chr2:18631619-18632600 FORWARD
Evalue: 5e-44 | Bitscore: 172
Identities = 86/107 (80%), Positives = 98/107 (91%) |
Tair |
Show Blast
|
| AT2G45170.1 |
| Symbols: ATG8E, AtATG8e | AtATG8e (AUTOPHAGY 8E); microtubule binding | chr2:18631619-18632600 FORWARD
Evalue: 5e-44 | Bitscore: 172
Identities = 86/107 (80%), Positives = 98/107 (91%) |
Tair |
Show Blast
|
| AT4G21980.1 |
| Symbols: ATG8A, APG8A | APG8A (autophagy 8A) | chr4:11655925-11656821 FORWARD
Evalue: 6e-44 | Bitscore: 172
Identities = 84/103 (81%), Positives = 93/103 (90%) |
Tair |
Show Blast
|
| AT1G62040.1 |
| Symbols: ATG8C | ATG8C (AUTOPHAGY 8C); microtubule binding | chr1:22936881-22937918 FORWARD
Evalue: 1e-43 | Bitscore: 171
Identities = 83/105 (79%), Positives = 95/105 (90%) |
Tair |
Show Blast
|
| AT4G04620.2 |
| Symbols: ATG8B | ATG8B (AUTOPHAGY 8B); microtubule binding | chr4:2328661-2329924 REVERSE
Evalue: 1e-43 | Bitscore: 171
Identities = 82/103 (79%), Positives = 92/103 (89%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST01687 |
Support Model | N |
More Info |
| Comment | EST is inconsistent with the given gene model. |
| Mapping Location | 908688..908765,909083..909549 |
Strand + |
| EST ID | OtEST02913 |
Support Model | N |
More Info |
| Comment | EST is inconsistent with the given gene model. |
| Mapping Location | 908688..908765,909083..909549 |
Strand + |
| EST ID | OtEST03254 |
Support Model | N |
More Info |
| Comment | EST is inconsistent with the given gene model. |
| Mapping Location | 908726..908765,909083..909417 |
Strand + |
|
