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Ostreococcus tauri


Gene ID
Ot01g02250
Locus
Ot01g02250
Functional Description
actin-related protein 3 (ISS)
Gene Type
protein-coding gene
Contig
chrom01
Last Modified On
08 March 2010 19h29
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
actin-related protein 3 (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:3.30.420.40 no description Gene3D
G3DSA:3.90.640.10 no description Gene3D
IPR004000 Actin/actin-like InterPro
IPR020902 Actin/actin-like conserved site InterPro
SSF53067 Actin-like ATPase domain superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL50136.1 TPA: actin-related protein 3; AtARP3 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1016
Identities = 641/641 (100%), Positives = 641/641 (100%), Gaps = 0/641 (0%)
NCBI
Show Blast
XP_001415475.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 660
Identities = 357/410 (87%), Positives = 381/410 (92%), Gaps = 3/410 (0%)
NCBI
Show Blast
ABR16368.1 unknown [Picea sitchensis]
Evalue: 1e-136 | Bitscore: 491
Identities = 264/427 (61%), Positives = 317/427 (74%), Gaps = 25/427 (5%)
NCBI
Show Blast
XP_002312654.1 predicted protein [Populus trichocarpa]
Evalue: 2e-133 | Bitscore: 480
Identities = 247/428 (57%), Positives = 311/428 (72%), Gaps = 26/428 (6%)
NCBI
Show Blast
XP_002315648.1 predicted protein [Populus trichocarpa]
Evalue: 3e-133 | Bitscore: 480
Identities = 248/428 (57%), Positives = 313/428 (73%), Gaps = 26/428 (6%)
NCBI
Show Blast
XP_002515041.1 protein binding protein, putative [Ricinus communis]
Evalue: 7e-133 | Bitscore: 478
Identities = 250/427 (58%), Positives = 312/427 (73%), Gaps = 25/427 (5%)
NCBI
Show Blast
CAM97883.1 actin-related protein 3 [Nicotiana tabacum]
Evalue: 6e-132 | Bitscore: 475
Identities = 246/426 (57%), Positives = 317/426 (74%), Gaps = 25/426 (5%)
NCBI
Show Blast
XP_002285370.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-131 | Bitscore: 473
Identities = 250/428 (58%), Positives = 312/428 (72%), Gaps = 25/428 (5%)
NCBI
Show Blast
XP_001766600.1 actin related protein Arp3 subunit [Physcomitrella patens subsp. patens]
Evalue: 4e-131 | Bitscore: 473
Identities = 249/424 (58%), Positives = 309/424 (72%), Gaps = 22/424 (5%)
NCBI
Show Blast
CAL22910.1 actin-related protein ARP3 [Physcomitrella patens]
Evalue: 5e-131 | Bitscore: 472
Identities = 248/424 (58%), Positives = 308/424 (72%), Gaps = 22/424 (5%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
OT01G02250
Redo Blast
CDS Length
1926 nucleotides
CDS Sequence

Protein 

Locus ID
OT01G02250
Redo Blast
Protein Length
595 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a