- Gene ID
- Ot01g00910
- Locus
- Ot01g00910
- Functional Description
- RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa polypeptide (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom01
- Last Modified On
- 08 March 2010 19h07
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa polypeptide (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
DNA binding
2.
DNA-directed 5'-3' RNA polymerase activity
- Biological Process
-
n/a
- Comment
-
Unknown GO IDs: GO:0006350
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL50002.1 |
RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa polypeptide (ISS) [Ostreococcus tauri]
Evalue: 2e-131 | Bitscore: 471
Identities = 230/230 (100%), Positives = 230/230 (100%), Gaps = 0/230 (0%) |
NCBI |
Show Blast
|
| XP_001418684.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-29 | Bitscore: 132
Identities = 60/66 (90%), Positives = 65/66 (98%), Gaps = 0/66 (0%) |
NCBI |
Show Blast
|
| XP_001415530.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-25 | Bitscore: 119
Identities = 59/104 (56%), Positives = 75/104 (72%), Gaps = 3/104 (2%) |
NCBI |
Show Blast
|
| XP_002503919.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-10 | Bitscore: 70
Identities = 28/51 (54%), Positives = 44/51 (86%), Gaps = 0/51 (0%) |
NCBI |
Show Blast
|
| XP_001782343.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-10 | Bitscore: 69
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 7/96 (7%) |
NCBI |
Show Blast
|
| Q9XVH6 |
Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans GN=W01G7.3 PE=2 SV=1
Evalue: 4e-11 | Bitscore: 68
Identities = 27/51 (52%), Positives = 40/51 (78%) |
SwissP |
Show Blast
|
| XP_002447457.1 |
hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
Evalue: 7e-10 | Bitscore: 68
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| EAZ02926.1 |
hypothetical protein OsI_25066 [Oryza sativa Indica Group]
Evalue: 8e-10 | Bitscore: 67
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 2/69 (2%) |
NCBI |
Show Blast
|
| XP_002461285.1 |
hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
Evalue: 9e-10 | Bitscore: 67
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| NP_001142057.1 |
hypothetical protein LOC100274213 [Zea mays]
Evalue: 9e-10 | Bitscore: 67
Identities = 26/62 (41%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| No hits found against database GOS with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL50002.1 |
RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa polypeptide (ISS) [Ostreococcus tauri]
Evalue: 2e-131 | Bitscore: 471
Identities = 230/230 (100%), Positives = 230/230 (100%), Gaps = 0/230 (0%) |
NCBI |
Show Blast
|
| XP_001418684.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-29 | Bitscore: 132
Identities = 60/66 (90%), Positives = 65/66 (98%), Gaps = 0/66 (0%) |
NCBI |
Show Blast
|
| XP_001415530.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-25 | Bitscore: 119
Identities = 59/104 (56%), Positives = 75/104 (72%), Gaps = 3/104 (2%) |
NCBI |
Show Blast
|
| XP_002503919.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-10 | Bitscore: 70
Identities = 28/51 (54%), Positives = 44/51 (86%), Gaps = 0/51 (0%) |
NCBI |
Show Blast
|
| XP_001782343.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-10 | Bitscore: 69
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 7/96 (7%) |
NCBI |
Show Blast
|
| XP_002447457.1 |
hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
Evalue: 7e-10 | Bitscore: 68
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| EAZ02926.1 |
hypothetical protein OsI_25066 [Oryza sativa Indica Group]
Evalue: 8e-10 | Bitscore: 67
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 2/69 (2%) |
NCBI |
Show Blast
|
| XP_002461285.1 |
hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
Evalue: 9e-10 | Bitscore: 67
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| NP_001142057.1 |
hypothetical protein LOC100274213 [Zea mays]
Evalue: 9e-10 | Bitscore: 67
Identities = 26/62 (41%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| XP_001898248.1 |
RNA polymerase II. [Brugia malayi]
Evalue: 1e-09 | Bitscore: 67
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 0/62 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9XVH6 |
Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans GN=W01G7.3 PE=2 SV=1
Evalue: 4e-11 | Bitscore: 68
Identities = 27/51 (52%), Positives = 40/51 (78%) |
SwissP |
Show Blast
|
| Q9VJE4 |
DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1
Evalue: 2e-10 | Bitscore: 66
Identities = 26/61 (42%), Positives = 45/61 (73%) |
SwissP |
Show Blast
|
| Q60SM4 |
Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=CBG20834 PE=3 SV=1
Evalue: 4e-10 | Bitscore: 65
Identities = 27/51 (52%), Positives = 39/51 (76%) |
SwissP |
Show Blast
|
| O08740 |
DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=2 SV=1
Evalue: 4e-09 | Bitscore: 61
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 3/71 (4%) |
SwissP |
Show Blast
|
| Q32P79 |
DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1
Evalue: 5e-09 | Bitscore: 61
Identities = 24/57 (42%), Positives = 43/57 (75%) |
SwissP |
Show Blast
|
| P52435 |
DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1
Evalue: 5e-09 | Bitscore: 61
Identities = 24/57 (42%), Positives = 43/57 (75%) |
SwissP |
Show Blast
|
| Q9GZM3 |
DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=1
Evalue: 8e-09 | Bitscore: 60
Identities = 24/57 (42%), Positives = 43/57 (75%) |
SwissP |
Show Blast
|
| Q9H1A7 |
DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1
Evalue: 8e-09 | Bitscore: 60
Identities = 24/57 (42%), Positives = 43/57 (75%) |
SwissP |
Show Blast
|
| Q7PVQ9 |
DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2
Evalue: 1e-08 | Bitscore: 60
Identities = 23/61 (37%), Positives = 44/61 (72%) |
SwissP |
Show Blast
|
| Q38859 |
DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1
Evalue: 1e-08 | Bitscore: 59
Identities = 22/61 (36%), Positives = 43/61 (70%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G52090.1 |
| Symbols: ATRPB13.6 | ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding /
Evalue: 1e-09 | Bitscore: 59
Identities = 22/61 (36%), Positives = 43/61 (70%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
