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Bathycoccus prasinos


Gene ID
BathyCg00284
Locus
BathyCg00284
Functional Description
Photosystem I reaction center subunit XII
Gene Type
protein-coding gene
Contig
bathy_Chloroplast
Last Modified On
06 September 2011 21h55
History

Annotator  

Name
Bram Verhelst
Email
brhel@psb.vib-ugent.be
Lab
Bioinformatics and Systems Biology
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
PsaM
Alternative Names
n/a
Definition
Photosystem I reaction center subunit XII
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
photosystem I

2.
plasma membrane-derived photosystem I

Molecular Function
n/a
Biological Process
1.
photosynthesis

Protein Domains 


Domain IDDescriptionDatabase
SSF81548 Subunit XII of photosystem I reaction centre, PsaM superfamily
IPR010010 Photosystem I PsaM, reaction centre InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
YP_002808611.1 photosystem I subunit XII [Micromonas sp. RCC299]
Evalue: 4e-11 | Bitscore: 56
Identities = 28/31 (90%), Positives = 29/31 (94%), Gaps = 0/31 (0%)		 NCBI
Show Blast
YP_717257.1 PsaM [Ostreococcus tauri] sp|Q0P3J8.1|PSAM_OSTTA RecName: Full=Photosystem I reaction center subunit XII; AltName:
Evalue: 1e-10 | Bitscore: 55
Identities = 27/31 (87%), Positives = 29/31 (94%), Gaps = 0/31 (0%)		 NCBI
Show Blast
ACQ90850.1 M polypeptide of photosystem I [Pedinomonas minor]
Evalue: 4e-09 | Bitscore: 51
Identities = 22/31 (71%), Positives = 29/31 (94%), Gaps = 0/31 (0%)		 NCBI
Show Blast
YP_001382185.1 photosystem I subunit XII [Leptosira terrestris]
Evalue: 4e-09 | Bitscore: 51
Identities = 22/31 (71%), Positives = 30/31 (97%), Gaps = 0/31 (0%)		 NCBI
Show Blast
ACQ90771.1 M polypeptide of photosystem I [Oocystis solitaria]
Evalue: 2e-08 | Bitscore: 49
Identities = 20/31 (65%), Positives = 29/31 (94%), Gaps = 0/31 (0%)		 NCBI
Show Blast
YP_002601036.1 M polypeptide of photosystem I [Monomastix sp. OKE-1]
Evalue: 6e-08 | Bitscore: 48
Identities = 22/29 (76%), Positives = 27/29 (93%), Gaps = 0/29 (0%)		 NCBI
Show Blast
YP_004221995.1 photosystem I subunit XII [Coccomyxa sp. C-169]
Evalue: 1e-07 | Bitscore: 48
Identities = 20/31 (65%), Positives = 28/31 (90%), Gaps = 0/31 (0%)		 NCBI
Show Blast
ZP_03275577.1 photosystem I reaction center subunit XII [Arthrospira maxima CS-328]
Evalue: 2e-07 | Bitscore: 47
Identities = 22/31 (71%), Positives = 27/31 (87%), Gaps = 0/31 (0%)		 NCBI
Show Blast
ZP_06308340.1 hypothetical protein CRC_01758 [Cylindrospermopsis raciborskii CS-505]
Evalue: 3e-07 | Bitscore: 47
Identities = 21/31 (68%), Positives = 27/31 (87%), Gaps = 0/31 (0%)		 NCBI
Show Blast
ZP_06304791.1 hypothetical protein CRD_01488 [Raphidiopsis brookii D9]
Evalue: 7e-07 | Bitscore: 46
Identities = 21/31 (68%), Positives = 27/31 (87%), Gaps = 0/31 (0%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
3

Alternative Models  

n/a
 

CDS  

Locus ID
BathyCg00284
Redo Blast
CDS Length
96 nucleotides
CDS Sequence

Protein 

Locus ID
BathyCg00284
Redo Blast
Protein Length
31 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a