Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy18g01430
Locus
Bathy18g01430
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_18
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR013785 Aldolase-type TIM barrel InterPro
IPR000644 Cystathionine beta-synthase, core InterPro
SSF54631 CBS-domain superfamily
PTHR11911 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003081808.1 unnamed protein product [Ostreococcus tauri]
Evalue: 4e-27 | Bitscore: 124
Identities = 74/152 (49%), Positives = 98/152 (64%), Gaps = 10/152 (7%)
NCBI
Show Blast
XP_002509118.1 predicted protein [Micromonas sp. RCC299]
Evalue: 7e-22 | Bitscore: 107
Identities = 67/151 (44%), Positives = 86/151 (57%), Gaps = 26/151 (17%)
NCBI
Show Blast
CBB36496.1 Arabidopsis protein targeted to mitochondria proteins At5g10860 [Saccharum hybrid cultivar R570]
Evalue: 2e-16 | Bitscore: 89
Identities = 51/109 (47%), Positives = 68/109 (62%), Gaps = 10/109 (9%)
NCBI
Show Blast
NP_001150216.1 CBS domain protein [Zea mays]
Evalue: 2e-16 | Bitscore: 89
Identities = 51/112 (46%), Positives = 70/112 (63%), Gaps = 10/112 (9%)
NCBI
Show Blast
CBB36473.1 Arabidopsis protein targeted to mitochondria proteins At5g10860 [Saccharum hybrid cultivar R570]
Evalue: 2e-16 | Bitscore: 89
Identities = 51/109 (47%), Positives = 68/109 (62%), Gaps = 10/109 (9%)
NCBI
Show Blast
XP_001420233.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 9e-16 | Bitscore: 86
Identities = 51/109 (47%), Positives = 69/109 (63%), Gaps = 10/109 (9%)
NCBI
Show Blast
ACJ84966.1 unknown [Medicago truncatula]
Evalue: 1e-15 | Bitscore: 86
Identities = 49/109 (45%), Positives = 67/109 (61%), Gaps = 10/109 (9%)
NCBI
Show Blast
XP_002526389.1 conserved hypothetical protein [Ricinus communis]
Evalue: 2e-15 | Bitscore: 85
Identities = 49/109 (45%), Positives = 68/109 (62%), Gaps = 10/109 (9%)
NCBI
Show Blast
CBI15781.3 unnamed protein product [Vitis vinifera]
Evalue: 2e-15 | Bitscore: 85
Identities = 49/109 (45%), Positives = 67/109 (61%), Gaps = 10/109 (9%)
NCBI
Show Blast
XP_002262902.1 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
Evalue: 3e-15 | Bitscore: 85
Identities = 49/109 (45%), Positives = 67/109 (61%), Gaps = 10/109 (9%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy18g01430
Redo Blast
CDS Length
444 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy18g01430
Redo Blast
Protein Length
148 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a