- Gene ID
- Bathy18g01020
- Locus
- Bathy18g01020
- Functional Description
- predicted protein
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_18
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
Sorry, only history comparison allowed for non logged in users!! |
Compare this version with : Go! |
Link Out
pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- predicted protein
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
cullin-RING ubiquitin ligase complex
- Molecular Function
-
1.
ubiquitin protein ligase binding
- Biological Process
-
1.
ubiquitin-dependent protein catabolic process
Protein Domains
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
XP_002504743.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-111 | Bitscore: 408 Identities = 261/653 (40%), Positives = 366/653 (56%), Gaps = 102/653 (16%) |
NCBI |
Show Blast
|
XP_001764780.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-105 | Bitscore: 389 Identities = 252/629 (40%), Positives = 345/629 (55%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
XP_002305340.1 |
predicted protein [Populus trichocarpa]
Evalue: 6e-97 | Bitscore: 360 Identities = 241/631 (38%), Positives = 338/631 (54%), Gaps = 105/631 (17%) |
NCBI |
Show Blast
|
EEC76292.1 |
hypothetical protein OsI_13805 [Oryza sativa Indica Group]
Evalue: 1e-96 | Bitscore: 359 Identities = 235/629 (37%), Positives = 337/629 (54%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
ABF99238.1 |
Cullin-4B, putative, expressed [Oryza sativa Japonica Group]
Evalue: 1e-96 | Bitscore: 359 Identities = 234/629 (37%), Positives = 338/629 (54%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
EEE60060.1 |
hypothetical protein OsJ_12866 [Oryza sativa Japonica Group]
Evalue: 2e-96 | Bitscore: 358 Identities = 235/629 (37%), Positives = 337/629 (54%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
XP_002332001.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-96 | Bitscore: 358 Identities = 240/631 (38%), Positives = 338/631 (54%), Gaps = 105/631 (17%) |
NCBI |
Show Blast
|
ABX09988.1 |
cullin 4 [Solanum lycopersicum]
Evalue: 7e-96 | Bitscore: 357 Identities = 240/631 (38%), Positives = 335/631 (53%), Gaps = 105/631 (17%) |
NCBI |
Show Blast
|
XP_002270764.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-95 | Bitscore: 356 Identities = 236/629 (38%), Positives = 334/629 (53%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
AAT75245.1 |
putative cullin protein [Oryza sativa Japonica Group]
Evalue: 2e-95 | Bitscore: 355 Identities = 237/639 (37%), Positives = 340/639 (53%), Gaps = 112/639 (18%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
XP_002504743.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-111 | Bitscore: 408 Identities = 261/653 (40%), Positives = 366/653 (56%), Gaps = 102/653 (16%) |
NCBI |
Show Blast
|
XP_001764780.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-105 | Bitscore: 389 Identities = 252/629 (40%), Positives = 345/629 (55%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
XP_002305340.1 |
predicted protein [Populus trichocarpa]
Evalue: 6e-97 | Bitscore: 360 Identities = 241/631 (38%), Positives = 338/631 (54%), Gaps = 105/631 (17%) |
NCBI |
Show Blast
|
EEC76292.1 |
hypothetical protein OsI_13805 [Oryza sativa Indica Group]
Evalue: 1e-96 | Bitscore: 359 Identities = 235/629 (37%), Positives = 337/629 (54%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
ABF99238.1 |
Cullin-4B, putative, expressed [Oryza sativa Japonica Group]
Evalue: 1e-96 | Bitscore: 359 Identities = 234/629 (37%), Positives = 338/629 (54%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
EEE60060.1 |
hypothetical protein OsJ_12866 [Oryza sativa Japonica Group]
Evalue: 2e-96 | Bitscore: 358 Identities = 235/629 (37%), Positives = 337/629 (54%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
XP_002332001.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-96 | Bitscore: 358 Identities = 240/631 (38%), Positives = 338/631 (54%), Gaps = 105/631 (17%) |
NCBI |
Show Blast
|
ABX09988.1 |
cullin 4 [Solanum lycopersicum]
Evalue: 7e-96 | Bitscore: 357 Identities = 240/631 (38%), Positives = 335/631 (53%), Gaps = 105/631 (17%) |
NCBI |
Show Blast
|
XP_002270764.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-95 | Bitscore: 356 Identities = 236/629 (38%), Positives = 334/629 (53%), Gaps = 101/629 (16%) |
NCBI |
Show Blast
|
AAT75245.1 |
putative cullin protein [Oryza sativa Japonica Group]
Evalue: 2e-95 | Bitscore: 355 Identities = 237/639 (37%), Positives = 340/639 (53%), Gaps = 112/639 (18%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Q8LGH4 |
Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
Evalue: 1e-84 | Bitscore: 315 Identities = 230/629 (36%), Positives = 328/629 (52%), Gaps = 101/629 (16%) |
SwissP |
Show Blast
|
B5DF89 |
Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Evalue: 1e-69 | Bitscore: 265 Identities = 217/651 (33%), Positives = 323/651 (49%), Gaps = 110/651 (16%) |
SwissP |
Show Blast
|
Q13618 |
Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Evalue: 1e-69 | Bitscore: 265 Identities = 217/651 (33%), Positives = 323/651 (49%), Gaps = 110/651 (16%) |
SwissP |
Show Blast
|
A4IHP4 |
Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Evalue: 2e-69 | Bitscore: 264 Identities = 217/651 (33%), Positives = 323/651 (49%), Gaps = 110/651 (16%) |
SwissP |
Show Blast
|
Q9JLV5 |
Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Evalue: 2e-69 | Bitscore: 264 Identities = 217/651 (33%), Positives = 323/651 (49%), Gaps = 110/651 (16%) |
SwissP |
Show Blast
|
Q6DE95 |
Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Evalue: 3e-69 | Bitscore: 263 Identities = 217/651 (33%), Positives = 322/651 (49%), Gaps = 110/651 (16%) |
SwissP |
Show Blast
|
Q9SRZ0 |
Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1
Evalue: 1e-55 | Bitscore: 218 Identities = 182/650 (28%), Positives = 291/650 (44%), Gaps = 122/650 (18%) |
SwissP |
Show Blast
|
Q13620 |
Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4
Evalue: 3e-50 | Bitscore: 201 Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 11/289 (3%) |
SwissP |
Show Blast
|
A2A432 |
Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1
Evalue: 1e-49 | Bitscore: 198 Identities = 125/289 (43%), Positives = 175/289 (60%), Gaps = 11/289 (3%) |
SwissP |
Show Blast
|
Q3TCH7 |
Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1
Evalue: 5e-49 | Bitscore: 197 Identities = 116/271 (42%), Positives = 162/271 (59%), Gaps = 34/271 (12%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
EST ID | SuperContig_18.clus60.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 192796..193208 |
Strand - |
EST ID | SuperContig_18.clus9.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 193249..193568 |
Strand + |
EST ID | SuperContig_18.clus89.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 193827..194240 |
Strand + |
EST ID | SuperContig_18.clus50.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 194291..194564 |
Strand + |
EST ID | SuperContig_18.clus39.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 194866..195119 |
Strand + |
|