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Bathycoccus prasinos


Gene ID
Bathy18g01020
Locus
Bathy18g01020
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_18
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cullin-RING ubiquitin ligase complex

Molecular Function
1.
ubiquitin protein ligase binding

Biological Process
1.
ubiquitin-dependent protein catabolic process

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:1.20.1310.10 no description Gene3D
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding InterPro
IPR016158 Cullin homology InterPro
IPR019559 Cullin protein, neddylation domain InterPro
PTHR11932 FAMILY NOT NAMED HMMPanther
IPR001373 Cullin, N-terminal InterPro
IPR016157 Cullin, conserved site InterPro
G3DSA:4.10.1030.10 no description Gene3D

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002504743.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-111 | Bitscore: 408
Identities = 261/653 (40%), Positives = 366/653 (56%), Gaps = 102/653 (16%)
NCBI
Show Blast
XP_001764780.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-105 | Bitscore: 389
Identities = 252/629 (40%), Positives = 345/629 (55%), Gaps = 101/629 (16%)
NCBI
Show Blast
XP_002305340.1 predicted protein [Populus trichocarpa]
Evalue: 6e-97 | Bitscore: 360
Identities = 241/631 (38%), Positives = 338/631 (54%), Gaps = 105/631 (17%)
NCBI
Show Blast
EEC76292.1 hypothetical protein OsI_13805 [Oryza sativa Indica Group]
Evalue: 1e-96 | Bitscore: 359
Identities = 235/629 (37%), Positives = 337/629 (54%), Gaps = 101/629 (16%)
NCBI
Show Blast
ABF99238.1 Cullin-4B, putative, expressed [Oryza sativa Japonica Group]
Evalue: 1e-96 | Bitscore: 359
Identities = 234/629 (37%), Positives = 338/629 (54%), Gaps = 101/629 (16%)
NCBI
Show Blast
EEE60060.1 hypothetical protein OsJ_12866 [Oryza sativa Japonica Group]
Evalue: 2e-96 | Bitscore: 358
Identities = 235/629 (37%), Positives = 337/629 (54%), Gaps = 101/629 (16%)
NCBI
Show Blast
XP_002332001.1 predicted protein [Populus trichocarpa]
Evalue: 3e-96 | Bitscore: 358
Identities = 240/631 (38%), Positives = 338/631 (54%), Gaps = 105/631 (17%)
NCBI
Show Blast
ABX09988.1 cullin 4 [Solanum lycopersicum]
Evalue: 7e-96 | Bitscore: 357
Identities = 240/631 (38%), Positives = 335/631 (53%), Gaps = 105/631 (17%)
NCBI
Show Blast
XP_002270764.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-95 | Bitscore: 356
Identities = 236/629 (38%), Positives = 334/629 (53%), Gaps = 101/629 (16%)
NCBI
Show Blast
AAT75245.1 putative cullin protein [Oryza sativa Japonica Group]
Evalue: 2e-95 | Bitscore: 355
Identities = 237/639 (37%), Positives = 340/639 (53%), Gaps = 112/639 (18%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy18g01020
Redo Blast
CDS Length
2946 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy18g01020
Redo Blast
Protein Length
982 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_18.clus60.Contig1 Support ModelY More Info
EST IDSuperContig_18.clus9.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_18.clus89.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_18.clus50.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_18.clus39.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information