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Bathycoccus prasinos


Gene ID
Bathy18g00910
Locus
Bathy18g00910
Functional Description
unnamed protein product
Gene Type
protein-coding gene
Contig
bathy_chrom_18
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unnamed protein product
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
PTHR18929 FAMILY NOT NAMED HMMPanther
IPR013766 Thioredoxin domain InterPro
IPR017937 Thioredoxin, conserved site InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001350237.1 thioredoxin-related protein, putative [Plasmodium falciparum 3D7]
Evalue: 4e-18 | Bitscore: 96
Identities = 58/181 (32%), Positives = 97/181 (54%), Gaps = 17/181 (9%)
NCBI
Show Blast
XP_676922.1 thioredoxin-related protein [Plasmodium berghei strain ANKA]
Evalue: 1e-17 | Bitscore: 94
Identities = 58/179 (32%), Positives = 93/179 (52%), Gaps = 21/179 (12%)
NCBI
Show Blast
XP_726855.1 transmembrane protein 17 [Plasmodium yoelii yoelii str. 17XNL]
Evalue: 3e-16 | Bitscore: 90
Identities = 45/110 (41%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
NCBI
Show Blast
EFN88315.1 Thioredoxin domain-containing protein 5 [Harpegnathos saltator]
Evalue: 2e-15 | Bitscore: 87
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
NCBI
Show Blast
XP_003078559.1 protein disulfide-isomerase (ISS) [Ostreococcus tauri]
Evalue: 4e-15 | Bitscore: 86
Identities = 59/185 (32%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
NCBI
Show Blast
XP_002259825.1 thioredoxin-related protein [Plasmodium knowlesi strain H]
Evalue: 5e-15 | Bitscore: 85
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
NCBI
Show Blast
XP_002289024.1 predicted protein [Thalassiosira pseudonana CCMP1335]
Evalue: 6e-15 | Bitscore: 85
Identities = 47/107 (44%), Positives = 66/107 (62%), Gaps = 7/107 (7%)
NCBI
Show Blast
XP_002641981.1 C. briggsae CBR-PDI-1 protein [Caenorhabditis briggsae]
Evalue: 1e-14 | Bitscore: 84
Identities = 43/108 (40%), Positives = 65/108 (60%), Gaps = 6/108 (6%)
NCBI
Show Blast
DAA34042.1 TPA_exp: hypothetical conserved protein 112 [Amblyomma variegatum]
Evalue: 1e-14 | Bitscore: 84
Identities = 57/174 (33%), Positives = 86/174 (49%), Gaps = 37/174 (21%)
NCBI
Show Blast
ABO47865.1 protein disulfide-isomerase [Alexandrium fundyense]
Evalue: 1e-14 | Bitscore: 84
Identities = 47/108 (44%), Positives = 65/108 (60%), Gaps = 9/108 (8%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy18g00910
Redo Blast
CDS Length
789 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy18g00910
Redo Blast
Protein Length
263 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_18.clus69.Contig1 Support ModelY More Info