Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy17g02310
Locus
Bathy17g02310
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_17
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
glutathione transferase activity

Biological Process
1.
metabolic process

Protein Domains 


Domain IDDescriptionDatabase
PTHR11571 FAMILY NOT NAMED HMMPanther
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR003080 Glutathione S-transferase, alpha class InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002500006.1 predicted protein [Micromonas sp. RCC299]
Evalue: 5e-57 | Bitscore: 225
Identities = 119/275 (43%), Positives = 166/275 (60%), Gaps = 7/275 (3%)		 NCBI
Show Blast
XP_001421424.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-49 | Bitscore: 201
Identities = 113/248 (46%), Positives = 152/248 (61%), Gaps = 5/248 (2%)		 NCBI
Show Blast
EGB02203.1 hypothetical protein AURANDRAFT_39533 [Aureococcus anophagefferens]
Evalue: 6e-38 | Bitscore: 162
Identities = 97/265 (37%), Positives = 143/265 (54%), Gaps = 10/265 (4%)		 NCBI
Show Blast
XP_003063147.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-35 | Bitscore: 152
Identities = 111/309 (36%), Positives = 155/309 (50%), Gaps = 38/309 (12%)		 NCBI
Show Blast
NP_494882.2 Glutathione S-Transferase family member (gst-6) [Caenorhabditis elegans]
Evalue: 5e-09 | Bitscore: 66
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (17%)		 NCBI
Show Blast
P91252 Probable glutathione S-transferase 6 OS=Caenorhabditis elegans GN=gst-6 PE=2 SV=2
Evalue: 1e-09 | Bitscore: 64
Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 39/240 (16%)		 SwissP
Show Blast
XP_002630602.1 C. briggsae CBR-GST-6.1 protein [Caenorhabditis briggsae]
Evalue: 1e-08 | Bitscore: 64
Identities = 48/178 (27%), Positives = 82/178 (46%), Gaps = 21/178 (12%)		 NCBI
Show Blast
XP_003108993.1 CRE-GST-6 protein [Caenorhabditis remanei]
Evalue: 8e-08 | Bitscore: 62
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 26/212 (12%)		 NCBI
Show Blast
XP_002783033.1 glutathione s-transferase, putative [Perkinsus marinus ATCC 50983]
Evalue: 1e-07 | Bitscore: 62
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 33/229 (14%)		 NCBI
Show Blast
XP_002644402.1 C. briggsae CBR-GST-11 protein [Caenorhabditis briggsae]
Evalue: 3e-07 | Bitscore: 60
Identities = 50/184 (27%), Positives = 77/184 (42%), Gaps = 34/184 (18%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy17g02310
Redo Blast
CDS Length
864 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy17g02310
Redo Blast
Protein Length
288 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a