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Bathycoccus prasinos


Gene ID
Bathy17g00390
Locus
Bathy17g00390
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_17
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
IPR002048 Calcium-binding EF-hand InterPro
PTHR10827 RETICULOCALBIN HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002513128.1 Reticulocalbin-2 precursor, putative [Ricinus communis]
Evalue: 5e-30 | Bitscore: 136
Identities = 93/271 (34%), Positives = 144/271 (53%), Gaps = 26/271 (10%)		 NCBI
Show Blast
XP_002267285.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-29 | Bitscore: 135
Identities = 95/270 (35%), Positives = 142/270 (53%), Gaps = 30/270 (11%)		 NCBI
Show Blast
XP_002307146.1 predicted protein [Populus trichocarpa]
Evalue: 2e-29 | Bitscore: 134
Identities = 95/271 (35%), Positives = 141/271 (52%), Gaps = 26/271 (10%)		 NCBI
Show Blast
EEC72762.1 hypothetical protein OsI_06410 [Oryza sativa Indica Group]
Evalue: 7e-29 | Bitscore: 132
Identities = 97/276 (35%), Positives = 138/276 (50%), Gaps = 38/276 (14%)		 NCBI
Show Blast
XP_001782563.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-28 | Bitscore: 132
Identities = 91/272 (33%), Positives = 149/272 (55%), Gaps = 31/272 (11%)		 NCBI
Show Blast
BAK00840.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 3e-28 | Bitscore: 130
Identities = 95/271 (35%), Positives = 136/271 (50%), Gaps = 28/271 (10%)		 NCBI
Show Blast
NP_001046324.2 Os02g0221800 [Oryza sativa Japonica Group]
Evalue: 4e-28 | Bitscore: 130
Identities = 90/271 (33%), Positives = 134/271 (49%), Gaps = 28/271 (10%)		 NCBI
Show Blast
XP_002310630.1 predicted protein [Populus trichocarpa]
Evalue: 4e-28 | Bitscore: 130
Identities = 92/271 (34%), Positives = 140/271 (52%), Gaps = 26/271 (10%)		 NCBI
Show Blast
EEE56578.1 hypothetical protein OsJ_05929 [Oryza sativa Japonica Group]
Evalue: 1e-27 | Bitscore: 128
Identities = 95/278 (34%), Positives = 136/278 (49%), Gaps = 42/278 (15%)		 NCBI
Show Blast
XP_001782092.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-27 | Bitscore: 127
Identities = 92/269 (34%), Positives = 141/269 (52%), Gaps = 25/269 (9%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy17g00390
Redo Blast
CDS Length
1095 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy17g00390
Redo Blast
Protein Length
365 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_17.clus288.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information