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Bathycoccus prasinos


Gene ID
Bathy17g00280
Locus
Bathy17g00280
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_17
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cullin-RING ubiquitin ligase complex

Molecular Function
1.
ubiquitin protein ligase binding

Biological Process
1.
ubiquitin-dependent protein catabolic process

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:1.20.1310.10 no description Gene3D
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding InterPro
IPR016158 Cullin homology InterPro
IPR019559 Cullin protein, neddylation domain InterPro
IPR001373 Cullin, N-terminal InterPro
PTHR11932 FAMILY NOT NAMED HMMPanther
G3DSA:4.10.1030.10 no description Gene3D

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003062540.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 749
Identities = 376/765 (49%), Positives = 522/765 (68%), Gaps = 34/765 (4%)		 NCBI
Show Blast
XP_002501605.1 predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 748
Identities = 381/757 (50%), Positives = 514/757 (68%), Gaps = 28/757 (4%)		 NCBI
Show Blast
XP_002986737.1 hypothetical protein SELMODRAFT_158171 [Selaginella moellendorffii]
Evalue: 0.0 | Bitscore: 732
Identities = 378/770 (49%), Positives = 517/770 (67%), Gaps = 49/770 (6%)		 NCBI
Show Blast
XP_002973273.1 hypothetical protein SELMODRAFT_173394 [Selaginella moellendorffii]
Evalue: 0.0 | Bitscore: 730
Identities = 378/770 (49%), Positives = 516/770 (67%), Gaps = 49/770 (6%)		 NCBI
Show Blast
ABR17842.1 unknown [Picea sitchensis]
Evalue: 0.0 | Bitscore: 726
Identities = 374/764 (49%), Positives = 517/764 (68%), Gaps = 45/764 (6%)		 NCBI
Show Blast
XP_001771962.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 724
Identities = 367/755 (49%), Positives = 509/755 (67%), Gaps = 31/755 (4%)		 NCBI
Show Blast
XP_002330364.1 predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 723
Identities = 369/760 (49%), Positives = 509/760 (67%), Gaps = 37/760 (5%)		 NCBI
Show Blast
XP_002272195.1 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
Evalue: 0.0 | Bitscore: 722
Identities = 362/758 (48%), Positives = 512/758 (68%), Gaps = 33/758 (4%)		 NCBI
Show Blast
XP_002874909.1 ATCUL1 [Arabidopsis lyrata subsp. lyrata]
Evalue: 0.0 | Bitscore: 718
Identities = 358/757 (47%), Positives = 509/757 (67%), Gaps = 34/757 (4%)		 NCBI
Show Blast
XP_002516899.1 Cullin-1, putative [Ricinus communis]
Evalue: 0.0 | Bitscore: 718
Identities = 363/758 (48%), Positives = 509/758 (67%), Gaps = 33/758 (4%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy17g00280
Redo Blast
CDS Length
2406 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy17g00280
Redo Blast
Protein Length
802 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_17.clus45.Contig1 Support ModelY More Info
EST IDSuperContig_17.clus45.Contig2 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_17.clus31.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information