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Bathycoccus prasinos


Gene ID
Bathy17g00200
Locus
Bathy17g00200
Functional Description
thioredoxin domain-containing protein 9
Gene Type
protein-coding gene
Contig
bathy_chrom_17
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
thioredoxin domain-containing protein 9
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
PTHR21148 FAMILY NOT NAMED HMMPanther
IPR013766 Thioredoxin domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002500011.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-37 | Bitscore: 160
Identities = 95/154 (62%), Positives = 122/154 (79%), Gaps = 1/154 (1%)
NCBI
Show Blast
XP_003057918.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-35 | Bitscore: 152
Identities = 94/154 (61%), Positives = 119/154 (77%), Gaps = 1/154 (1%)
NCBI
Show Blast
XP_001418816.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-31 | Bitscore: 139
Identities = 97/192 (51%), Positives = 131/192 (68%), Gaps = 12/192 (6%)
NCBI
Show Blast
XP_003080134.1 putative ATP binding protein (ISS) [Ostreococcus tauri]
Evalue: 4e-31 | Bitscore: 138
Identities = 98/194 (51%), Positives = 130/194 (67%), Gaps = 12/194 (6%)
NCBI
Show Blast
XP_002953944.1 hypothetical protein VOLCADRAFT_76090 [Volvox carteri f. nagariensis]
Evalue: 8e-30 | Bitscore: 134
Identities = 74/125 (59%), Positives = 94/125 (75%), Gaps = 0/125 (0%)
NCBI
Show Blast
XP_001769378.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-29 | Bitscore: 132
Identities = 68/125 (54%), Positives = 94/125 (75%), Gaps = 0/125 (0%)
NCBI
Show Blast
XP_001690118.1 thioredoxin-like ATP binding protein 2 [Chlamydomonas reinhardtii]
Evalue: 3e-27 | Bitscore: 125
Identities = 67/125 (54%), Positives = 94/125 (75%), Gaps = 0/125 (0%)
NCBI
Show Blast
ACN41217.1 unknown [Picea sitchensis]
Evalue: 9e-26 | Bitscore: 120
Identities = 64/125 (51%), Positives = 86/125 (69%), Gaps = 0/125 (0%)
NCBI
Show Blast
ABK22183.1 unknown [Picea sitchensis]
Evalue: 9e-26 | Bitscore: 120
Identities = 64/125 (51%), Positives = 86/125 (69%), Gaps = 0/125 (0%)
NCBI
Show Blast
XP_002518645.1 Thioredoxin domain-containing protein, putative [Ricinus communis]
Evalue: 2e-25 | Bitscore: 119
Identities = 60/125 (48%), Positives = 88/125 (70%), Gaps = 0/125 (0%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy17g00200
Redo Blast
CDS Length
609 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy17g00200
Redo Blast
Protein Length
203 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a