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Bathycoccus prasinos


Gene ID
Bathy15g01560
Locus
Bathy15g01560
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_15
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR007741 Ribosomal protein/NADH dehydrogenase domain InterPro
PTHR21396 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002501028.1 predicted protein [Micromonas sp. RCC299]
Evalue: 5e-14 | Bitscore: 80
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 14/136 (10%)		 NCBI
Show Blast
XP_001760617.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-14 | Bitscore: 80
Identities = 44/126 (35%), Positives = 69/126 (55%), Gaps = 12/126 (10%)		 NCBI
Show Blast
XP_001415982.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-13 | Bitscore: 77
Identities = 45/123 (37%), Positives = 66/123 (54%), Gaps = 2/123 (2%)		 NCBI
Show Blast
XP_002966541.1 hypothetical protein SELMODRAFT_85537 [Selaginella moellendorffii]
Evalue: 1e-11 | Bitscore: 72
Identities = 43/124 (35%), Positives = 68/124 (55%), Gaps = 10/124 (8%)		 NCBI
Show Blast
ABK93645.1 unknown [Populus trichocarpa]
Evalue: 2e-11 | Bitscore: 72
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 12/123 (10%)		 NCBI
Show Blast
XP_002330707.1 predicted protein [Populus trichocarpa]
Evalue: 2e-11 | Bitscore: 72
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 12/123 (10%)		 NCBI
Show Blast
XP_002876517.1 mitochondrial ribosomal protein L51/S25/CI-B8 family protein [Arabidopsis lyrata subsp. lyrata]
Evalue: 4e-11 | Bitscore: 71
Identities = 41/121 (34%), Positives = 71/121 (59%), Gaps = 8/121 (7%)		 NCBI
Show Blast
NP_191524.1 mitochondrial ribosomal protein L51/S25/CI-B8 family protein [Arabidopsis thaliana]
Evalue: 5e-11 | Bitscore: 70
Identities = 40/121 (33%), Positives = 71/121 (59%), Gaps = 8/121 (7%)		 NCBI
Show Blast
CBJ25772.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 6e-11 | Bitscore: 70
Identities = 42/129 (33%), Positives = 62/129 (48%), Gaps = 22/129 (17%)		 NCBI
Show Blast
XP_002530576.1 60S ribosomal protein L51, putative [Ricinus communis]
Evalue: 7e-10 | Bitscore: 67
Identities = 40/121 (33%), Positives = 65/121 (54%), Gaps = 8/121 (7%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy15g01560
Redo Blast
CDS Length
402 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy15g01560
Redo Blast
Protein Length
134 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a