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Bathycoccus prasinos


Gene ID
Bathy15g00070
Locus
Bathy15g00070
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_15
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR017276 Synthesis of cytochrome c oxidase, Sco1/Sco2 InterPro
IPR003782 Copper chaperone SCO1/SenC InterPro
IPR012335 Thioredoxin fold InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002508419.1 predicted protein [Micromonas sp. RCC299]
Evalue: 8e-58 | Bitscore: 228
Identities = 120/224 (54%), Positives = 153/224 (68%), Gaps = 20/224 (9%)		 NCBI
Show Blast
XP_003062943.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-56 | Bitscore: 223
Identities = 123/218 (56%), Positives = 149/218 (68%), Gaps = 19/218 (9%)		 NCBI
Show Blast
XP_001422358.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 9e-55 | Bitscore: 218
Identities = 121/232 (52%), Positives = 156/232 (67%), Gaps = 19/232 (8%)		 NCBI
Show Blast
EFN55006.1 hypothetical protein CHLNCDRAFT_24122 [Chlorella variabilis]
Evalue: 5e-54 | Bitscore: 215
Identities = 104/207 (50%), Positives = 142/207 (69%), Gaps = 19/207 (9%)		 NCBI
Show Blast
XP_001701493.1 cytochrome c oxidase assembly factor [Chlamydomonas reinhardtii]
Evalue: 9e-51 | Bitscore: 204
Identities = 99/192 (52%), Positives = 134/192 (70%), Gaps = 16/192 (8%)		 NCBI
Show Blast
XP_002953173.1 hypothetical protein VOLCADRAFT_93834 [Volvox carteri f. nagariensis]
Evalue: 2e-50 | Bitscore: 204
Identities = 96/179 (54%), Positives = 128/179 (72%), Gaps = 16/179 (9%)		 NCBI
Show Blast
NP_001130056.1 hypothetical protein LOC100191148 [Zea mays]
Evalue: 2e-50 | Bitscore: 203
Identities = 112/222 (50%), Positives = 149/222 (67%), Gaps = 22/222 (10%)		 NCBI
Show Blast
XP_002453341.1 hypothetical protein SORBIDRAFT_04g004150 [Sorghum bicolor]
Evalue: 6e-50 | Bitscore: 202
Identities = 112/222 (50%), Positives = 149/222 (67%), Gaps = 22/222 (10%)		 NCBI
Show Blast
ABK24183.1 unknown [Picea sitchensis]
Evalue: 7e-50 | Bitscore: 201
Identities = 112/224 (50%), Positives = 149/224 (67%), Gaps = 22/224 (10%)		 NCBI
Show Blast
EAY84564.1 hypothetical protein OsI_05935 [Oryza sativa Indica Group]
Evalue: 9e-50 | Bitscore: 201
Identities = 110/222 (50%), Positives = 148/222 (67%), Gaps = 22/222 (10%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy15g00070
Redo Blast
CDS Length
885 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy15g00070
Redo Blast
Protein Length
295 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a