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Bathycoccus prasinos


Gene ID
Bathy14g02780
Locus
Bathy14g02780
Functional Description
glutathione peroxidase
Gene Type
protein-coding gene
Contig
bathy_chrom_14
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
glutathione peroxidase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
glutathione peroxidase activity

Biological Process
1.
response to oxidative stress

2.
obsolete oxidation-reduction process

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR000889 Glutathione peroxidase InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003063816.1 glutathione peroxidase [Micromonas pusilla CCMP1545]
Evalue: 7e-64 | Bitscore: 246
Identities = 108/149 (72%), Positives = 125/149 (84%), Gaps = 0/149 (0%)		 NCBI
Show Blast
XP_003080905.1 glutathione peroxidase (ISS) [Ostreococcus tauri]
Evalue: 2e-58 | Bitscore: 229
Identities = 109/211 (52%), Positives = 134/211 (64%), Gaps = 26/211 (12%)		 NCBI
Show Blast
XP_002507698.1 glutathione peroxidase [Micromonas sp. RCC299]
Evalue: 1e-51 | Bitscore: 206
Identities = 89/127 (70%), Positives = 106/127 (83%), Gaps = 0/127 (0%)		 NCBI
Show Blast
NP_001171856.1 glutathione peroxidase 2-like [Saccoglossus kowalevskii]
Evalue: 2e-37 | Bitscore: 159
Identities = 77/149 (52%), Positives = 98/149 (66%), Gaps = 8/149 (5%)		 NCBI
Show Blast
NP_001171857.1 glutathione peroxidase 2-like [Saccoglossus kowalevskii]
Evalue: 2e-37 | Bitscore: 159
Identities = 79/149 (53%), Positives = 98/149 (66%), Gaps = 8/149 (5%)		 NCBI
Show Blast
Q0EFA0 Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2
Evalue: 3e-38 | Bitscore: 158
Identities = 75/152 (49%), Positives = 100/152 (65%), Gaps = 9/152 (5%)		 SwissP
Show Blast
P07203 Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=4
Evalue: 4e-38 | Bitscore: 157
Identities = 75/152 (49%), Positives = 100/152 (65%), Gaps = 9/152 (5%)		 SwissP
Show Blast
Q4AEI2 Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2
Evalue: 5e-38 | Bitscore: 157
Identities = 75/152 (49%), Positives = 100/152 (65%), Gaps = 9/152 (5%)		 SwissP
Show Blast
Q4AEI3 Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1 PE=2 SV=2
Evalue: 5e-38 | Bitscore: 157
Identities = 75/152 (49%), Positives = 100/152 (65%), Gaps = 9/152 (5%)		 SwissP
Show Blast
ACM68948.1 selenium-dependent glutathione peroxidase [Macrobrachium rosenbergii]
Evalue: 7e-37 | Bitscore: 157
Identities = 76/149 (51%), Positives = 99/149 (66%), Gaps = 8/149 (5%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy14g02780
Redo Blast
CDS Length
570 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy14g02780
Redo Blast
Protein Length
190 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_11.clus53.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information