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Bathycoccus prasinos


Gene ID
Bathy14g00860
Locus
Bathy14g00860
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_14
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
SSF109604 HD-domain/PDEase-like superfamily
PTHR21262 FAMILY NOT NAMED HMMPanther
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR003107 RNA-processing protein, HAT helix InterPro
IPR011990 Tetratricopeptide-like helical InterPro
IPR002048 Calcium-binding EF-hand InterPro
IPR011992 EF-hand-like domain InterPro
SSF81301 Nucleotidyltransferase superfamily
IPR007685 RelA/SpoT InterPro
IPR018249 EF-HAND 2 InterPro
IPR013026 Tetratricopeptide repeat-containing InterPro
IPR019734 Tetratricopeptide repeat InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002501330.1 hypothetical protein MICPUN_57757 [Micromonas sp. RCC299]
Evalue: 8e-92 | Bitscore: 344
Identities = 265/703 (38%), Positives = 352/703 (50%), Gaps = 163/703 (23%)		 NCBI
Show Blast
XP_001416591.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-91 | Bitscore: 343
Identities = 250/678 (37%), Positives = 328/678 (48%), Gaps = 188/678 (28%)		 NCBI
Show Blast
XP_003078035.1 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein (ISS) [Ostreococcus tauri]
Evalue: 5e-71 | Bitscore: 275
Identities = 160/442 (36%), Positives = 235/442 (53%), Gaps = 58/442 (13%)		 NCBI
Show Blast
XP_003062410.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-66 | Bitscore: 257
Identities = 191/512 (37%), Positives = 253/512 (49%), Gaps = 137/512 (27%)		 NCBI
Show Blast
BAJ99774.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 1e-58 | Bitscore: 233
Identities = 185/609 (30%), Positives = 277/609 (45%), Gaps = 174/609 (29%)		 NCBI
Show Blast
XP_002439339.1 hypothetical protein SORBIDRAFT_09g004640 [Sorghum bicolor]
Evalue: 4e-57 | Bitscore: 229
Identities = 178/605 (29%), Positives = 268/605 (44%), Gaps = 180/605 (30%)		 NCBI
Show Blast
EAY96651.1 hypothetical protein OsI_18565 [Oryza sativa Indica Group]
Evalue: 3e-53 | Bitscore: 216
Identities = 166/590 (28%), Positives = 263/590 (45%), Gaps = 174/590 (29%)		 NCBI
Show Blast
BAB21485.1 chloroplast RelA homologue 2 [Oryza sativa Japonica Group]
Evalue: 5e-53 | Bitscore: 215
Identities = 165/590 (28%), Positives = 264/590 (45%), Gaps = 174/590 (29%)		 NCBI
Show Blast
NP_001054724.1 Os05g0161200 [Oryza sativa Japonica Group]
Evalue: 8e-53 | Bitscore: 214
Identities = 165/590 (28%), Positives = 264/590 (45%), Gaps = 174/590 (29%)		 NCBI
Show Blast
XP_002964964.1 hypothetical protein SELMODRAFT_83164 [Selaginella moellendorffii]
Evalue: 2e-52 | Bitscore: 213
Identities = 173/594 (29%), Positives = 254/594 (43%), Gaps = 177/594 (30%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy14g00860
Redo Blast
CDS Length
4563 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy14g00860
Redo Blast
Protein Length
1521 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a