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Bathycoccus prasinos


Gene ID
Bathy14g00360
Locus
Bathy14g00360
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_14
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
PS51257 PROKAR_LIPOPROTEIN Prosite
IPR011889 Bacterial surface protein 26-residue repeat InterPro
IPR013992 Adenylate cyclase-associated CAP, N-terminal InterPro
PTHR10270 SOX TRANSCRIPTION FACTOR HMMPanther
PR01217 PRICHEXTENSN FPrintScan
IPR005046 Protein of unknown function DUF285, lipoprotein predicted InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003078753.1 unnamed protein product [Ostreococcus tauri]
Evalue: 2e-99 | Bitscore: 370
Identities = 311/1030 (30%), Positives = 465/1030 (45%), Gaps = 156/1030 (15%)
NCBI
Show Blast
XP_001422029.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-93 | Bitscore: 350
Identities = 304/1040 (29%), Positives = 456/1040 (44%), Gaps = 133/1040 (13%)
NCBI
Show Blast
XP_003082128.1 LPA (ISS) [Ostreococcus tauri]
Evalue: 8e-86 | Bitscore: 325
Identities = 270/1033 (26%), Positives = 444/1033 (43%), Gaps = 148/1033 (14%)
NCBI
Show Blast
XP_003077935.1 Plg protein (ISS) [Ostreococcus tauri]
Evalue: 3e-83 | Bitscore: 317
Identities = 242/805 (30%), Positives = 364/805 (45%), Gaps = 118/805 (15%)
NCBI
Show Blast
XP_001417304.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-76 | Bitscore: 293
Identities = 241/793 (30%), Positives = 362/793 (46%), Gaps = 109/793 (14%)
NCBI
Show Blast
XP_003078752.1 unnamed protein product [Ostreococcus tauri]
Evalue: 2e-29 | Bitscore: 138
Identities = 136/471 (29%), Positives = 201/471 (43%), Gaps = 71/471 (15%)
NCBI
Show Blast
ZP_01116863.1 transmembrane protein, putative [Polaribacter irgensii 23-P]
Evalue: 7e-27 | Bitscore: 129
Identities = 63/127 (50%), Positives = 86/127 (68%), Gaps = 4/127 (3%)
NCBI
Show Blast
XP_002504792.1 predicted protein [Micromonas sp. RCC299]
Evalue: 4e-26 | Bitscore: 127
Identities = 83/173 (48%), Positives = 90/173 (52%), Gaps = 25/173 (14%)
NCBI
Show Blast
XP_002502681.1 predicted protein [Micromonas sp. RCC299]
Evalue: 6e-25 | Bitscore: 123
Identities = 69/127 (54%), Positives = 84/127 (66%), Gaps = 5/127 (4%)
NCBI
Show Blast
XP_002508441.1 predicted protein [Micromonas sp. RCC299]
Evalue: 6e-24 | Bitscore: 120
Identities = 77/174 (44%), Positives = 92/174 (53%), Gaps = 19/174 (11%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy14g00360
Redo Blast
CDS Length
10557 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy14g00360
Redo Blast
Protein Length
3519 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a