Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy13g00200
Locus
Bathy13g00200
Functional Description
sulfate permease family protein
Gene Type
protein-coding gene
Contig
bathy_chrom_13
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
sulfate permease family protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR011547 Sulphate transporter InterPro
IPR002645 Sulphate transporter/antisigma-factor antagonist STAS InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
PTHR11814 FAMILY NOT NAMED HMMPanther
SSF47473 EF-hand superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003082137.1 sulfate permease family protein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 729
Identities = 361/600 (60%), Positives = 452/600 (75%), Gaps = 22/600 (4%)		 NCBI
Show Blast
ZP_01618366.1 sulfate permease family protein [marine gamma proteobacterium HTCC2143]
Evalue: 5e-89 | Bitscore: 333
Identities = 230/666 (35%), Positives = 336/666 (50%), Gaps = 172/666 (26%)		 NCBI
Show Blast
ZP_01051574.1 sulfate permease [Dokdonia donghaensis MED134]
Evalue: 2e-71 | Bitscore: 275
Identities = 234/693 (34%), Positives = 353/693 (51%), Gaps = 121/693 (17%)		 NCBI
Show Blast
CBW27266.1 putative integral membrane transport protein [Bacteriovorax marinus SJ]
Evalue: 1e-67 | Bitscore: 263
Identities = 162/419 (39%), Positives = 231/419 (55%), Gaps = 73/419 (17%)		 NCBI
Show Blast
ZP_01311244.1 sulphate transporter [Desulfuromonas acetoxidans DSM 684]
Evalue: 1e-64 | Bitscore: 252
Identities = 152/392 (39%), Positives = 216/392 (55%), Gaps = 66/392 (17%)		 NCBI
Show Blast
YP_129398.1 putative sulfate permease family protein [Photobacterium profundum SS9]
Evalue: 5e-64 | Bitscore: 250
Identities = 149/417 (36%), Positives = 226/417 (54%), Gaps = 77/417 (18%)		 NCBI
Show Blast
YP_004052220.1 sulphate transporter [Marivirga tractuosa DSM 4126]
Evalue: 7e-63 | Bitscore: 246
Identities = 148/392 (38%), Positives = 221/392 (56%), Gaps = 69/392 (18%)		 NCBI
Show Blast
YP_865004.1 sulphate transporter [Magnetococcus sp. MC-1]
Evalue: 6e-60 | Bitscore: 237
Identities = 146/403 (36%), Positives = 217/403 (54%), Gaps = 71/403 (18%)		 NCBI
Show Blast
ZP_01234903.1 putative sulfate permease family protein [Vibrio angustum S14]
Evalue: 3e-59 | Bitscore: 234
Identities = 146/417 (35%), Positives = 224/417 (54%), Gaps = 77/417 (18%)		 NCBI
Show Blast
GAA04573.1 permease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
Evalue: 4e-58 | Bitscore: 231
Identities = 145/417 (35%), Positives = 223/417 (53%), Gaps = 77/417 (18%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy13g00200
Redo Blast
CDS Length
2199 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy13g00200
Redo Blast
Protein Length
733 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_10.clus349.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_10.clus364.Contig1 Support ModelY More Info