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Bathycoccus prasinos


Gene ID
Bathy12g03170
Locus
Bathy12g03170
Functional Description
bacterioferritin comigratory protein
Gene Type
protein-coding gene
Contig
bathy_chrom_12
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
bacterioferritin comigratory protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant InterPro
PTHR10681 THIOREDOXIN PEROXIDASE HMMPanther
IPR017936 Thioredoxin-like InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001422072.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 9e-56 | Bitscore: 221
Identities = 108/178 (61%), Positives = 129/178 (72%), Gaps = 6/178 (3%)
NCBI
Show Blast
XP_003084038.1 bacterioferritin comigratory protein (ISS) [Ostreococcus tauri]
Evalue: 5e-50 | Bitscore: 202
Identities = 100/188 (53%), Positives = 134/188 (71%), Gaps = 13/188 (7%)
NCBI
Show Blast
XP_003061613.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 5e-50 | Bitscore: 202
Identities = 101/191 (53%), Positives = 131/191 (69%), Gaps = 13/191 (7%)
NCBI
Show Blast
XP_002509142.1 predicted protein [Micromonas sp. RCC299]
Evalue: 5e-45 | Bitscore: 185
Identities = 86/132 (65%), Positives = 102/132 (77%), Gaps = 0/132 (0%)
NCBI
Show Blast
ZP_05039032.1 Redoxin superfamily [Synechococcus sp. PCC 7335]
Evalue: 1e-30 | Bitscore: 137
Identities = 74/192 (39%), Positives = 112/192 (58%), Gaps = 25/192 (13%)
NCBI
Show Blast
YP_001865929.1 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen [Nostoc punctiforme PCC 73102]
Evalue: 1e-29 | Bitscore: 134
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 22/194 (11%)
NCBI
Show Blast
ZP_03273914.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Arthrospira maxima CS-328]
Evalue: 2e-28 | Bitscore: 130
Identities = 70/188 (37%), Positives = 107/188 (57%), Gaps = 22/188 (12%)
NCBI
Show Blast
ZP_07111905.1 redoxin [Oscillatoria sp. PCC 6506]
Evalue: 4e-28 | Bitscore: 129
Identities = 72/192 (38%), Positives = 101/192 (53%), Gaps = 22/192 (11%)
NCBI
Show Blast
ZP_01727516.1 bacterioferritin comigratory protein [Cyanothece sp. CCY0110]
Evalue: 6e-28 | Bitscore: 128
Identities = 74/194 (38%), Positives = 112/194 (58%), Gaps = 27/194 (14%)
NCBI
Show Blast
ZP_06382613.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Arthrospira platensis str. Paraca]
Evalue: 1e-27 | Bitscore: 127
Identities = 69/188 (37%), Positives = 107/188 (57%), Gaps = 22/188 (12%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy12g03170
Redo Blast
CDS Length
768 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy12g03170
Redo Blast
Protein Length
256 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a