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Bathycoccus prasinos


Gene ID
Bathy12g01980
Locus
Bathy12g01980
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_12
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
PTHR12782 FAMILY NOT NAMED HMMPanther
IPR012335 Thioredoxin fold InterPro
IPR002109 Glutaredoxin InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR011767 Glutaredoxin active site InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003075154.1 Glutathione S-transferase-related protein (ISS) [Ostreococcus tauri]
Evalue: 1e-82 | Bitscore: 311
Identities = 158/252 (63%), Positives = 194/252 (77%), Gaps = 5/252 (2%)		 NCBI
Show Blast
XP_001416367.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-79 | Bitscore: 299
Identities = 154/251 (61%), Positives = 183/251 (73%), Gaps = 6/251 (2%)		 NCBI
Show Blast
XP_002505873.1 predicted protein [Micromonas sp. RCC299]
Evalue: 7e-78 | Bitscore: 295
Identities = 151/248 (61%), Positives = 188/248 (76%), Gaps = 7/248 (3%)		 NCBI
Show Blast
XP_003062735.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-68 | Bitscore: 264
Identities = 139/243 (57%), Positives = 173/243 (71%), Gaps = 5/243 (2%)		 NCBI
Show Blast
NP_001052302.1 Os04g0244400 [Oryza sativa Japonica Group]
Evalue: 4e-59 | Bitscore: 233
Identities = 118/244 (48%), Positives = 161/244 (66%), Gaps = 18/244 (7%)		 NCBI
Show Blast
CAH67930.1 H0211F06-OSIGBa0153M17.2 [Oryza sativa Indica Group]
Evalue: 6e-59 | Bitscore: 232
Identities = 118/244 (48%), Positives = 160/244 (66%), Gaps = 18/244 (7%)		 NCBI
Show Blast
NP_001130206.1 hypothetical protein LOC100191300 [Zea mays]
Evalue: 2e-58 | Bitscore: 231
Identities = 117/244 (48%), Positives = 161/244 (66%), Gaps = 18/244 (7%)		 NCBI
Show Blast
ACL54385.1 unknown [Zea mays]
Evalue: 2e-58 | Bitscore: 231
Identities = 117/244 (48%), Positives = 161/244 (66%), Gaps = 18/244 (7%)		 NCBI
Show Blast
BAK04530.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 4e-58 | Bitscore: 229
Identities = 116/243 (48%), Positives = 158/243 (65%), Gaps = 18/243 (7%)		 NCBI
Show Blast
XP_002446195.1 hypothetical protein SORBIDRAFT_06g003270 [Sorghum bicolor]
Evalue: 4e-58 | Bitscore: 229
Identities = 117/244 (48%), Positives = 158/244 (65%), Gaps = 19/244 (8%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy12g01980
Redo Blast
CDS Length
1116 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy12g01980
Redo Blast
Protein Length
372 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_14.clus396.Contig1 Support ModelY More Info