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Bathycoccus prasinos


Gene ID
Bathy11g03290
Locus
Bathy11g03290
Functional Description
hypothetical protein
Gene Type
protein-coding gene
Contig
bathy_chrom_11
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
hypothetical protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR019537 Transmembrane protein 65 InterPro
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
PTHR21706 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003081746.1 unnamed protein product [Ostreococcus tauri]
Evalue: 8e-26 | Bitscore: 122
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 15/175 (9%)		 NCBI
Show Blast
XP_001420198.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-22 | Bitscore: 111
Identities = 56/109 (51%), Positives = 75/109 (69%), Gaps = 0/109 (0%)		 NCBI
Show Blast
XP_002124808.1 PREDICTED: similar to transmembrane protein 65 [Ciona intestinalis]
Evalue: 1e-22 | Bitscore: 111
Identities = 59/120 (49%), Positives = 79/120 (66%), Gaps = 3/120 (3%)		 NCBI
Show Blast
NP_001122284.1 transmembrane protein 65 [Danio rerio]
Evalue: 2e-22 | Bitscore: 111
Identities = 57/118 (48%), Positives = 77/118 (65%), Gaps = 1/118 (1%)		 NCBI
Show Blast
XP_002905405.1 conserved hypothetical protein [Phytophthora infestans T30-4]
Evalue: 3e-22 | Bitscore: 110
Identities = 56/117 (48%), Positives = 79/117 (68%), Gaps = 1/117 (1%)		 NCBI
Show Blast
XP_002895428.1 conserved hypothetical protein [Phytophthora infestans T30-4]
Evalue: 4e-22 | Bitscore: 109
Identities = 64/162 (40%), Positives = 91/162 (56%), Gaps = 12/162 (7%)		 NCBI
Show Blast
XP_002503814.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-21 | Bitscore: 108
Identities = 54/113 (48%), Positives = 77/113 (68%), Gaps = 1/113 (1%)		 NCBI
Show Blast
CBJ48953.1 Uncharacterized conserved protein [Ectocarpus siliculosus]
Evalue: 4e-21 | Bitscore: 106
Identities = 67/187 (36%), Positives = 100/187 (53%), Gaps = 22/187 (12%)		 NCBI
Show Blast
XP_851731.1 PREDICTED: similar to C33H5.19 [Canis familiaris]
Evalue: 4e-21 | Bitscore: 106
Identities = 57/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (1%)		 NCBI
Show Blast
Q4VAE3 Transmembrane protein 65 OS=Mus musculus GN=Tmem65 PE=2 SV=1
Evalue: 4e-22 | Bitscore: 105
Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 1/118 (0%)		 SwissP
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy11g03290
Redo Blast
CDS Length
948 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy11g03290
Redo Blast
Protein Length
316 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_9.clus414.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information