Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy11g02450
Locus
Bathy11g02450
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_11
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR015006 Axin interactor, dorsalization-associated protein InterPro
IPR000261 EPS15 homology (EH) InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
SSF47473 EF-hand superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001419989.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-71 | Bitscore: 276
Identities = 158/368 (43%), Positives = 206/368 (56%), Gaps = 59/368 (16%)
NCBI
Show Blast
XP_003081669.1 Myosin class II heavy chain (ISS) [Ostreococcus tauri]
Evalue: 1e-56 | Bitscore: 227
Identities = 135/339 (40%), Positives = 176/339 (52%), Gaps = 62/339 (18%)
NCBI
Show Blast
XP_002503513.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-15 | Bitscore: 90
Identities = 48/135 (36%), Positives = 72/135 (53%), Gaps = 1/135 (1%)
NCBI
Show Blast
XP_003055625.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-13 | Bitscore: 83
Identities = 64/210 (30%), Positives = 89/210 (42%), Gaps = 39/210 (19%)
NCBI
Show Blast
NP_957084.1 axin interactor, dorsalization-associated protein [Danio rerio] sp|Q6PBN2.1|AIDA_DANRE RecName: Full=Axin interactor, dorsalization-associated protein;
Evalue: 1e-09 | Bitscore: 71
Identities = 42/136 (31%), Positives = 69/136 (51%), Gaps = 3/136 (2%)
NCBI
Show Blast
XP_003130561.1 PREDICTED: axin interactor, dorsalization-associated protein-like [Sus scrofa]
Evalue: 1e-09 | Bitscore: 71
Identities = 44/144 (31%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
NCBI
Show Blast
Q6PBN2 Axin interactor, dorsalization-associated protein OS=Danio rerio GN=aida PE=1 SV=1
Evalue: 3e-09 | Bitscore: 65
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
SwissP
Show Blast
Q8C4Q6 Axin interactor, dorsalization-associated protein OS=Mus musculus GN=Aida PE=1 SV=1
Evalue: 1e-08 | Bitscore: 63
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
SwissP
Show Blast
Q5RAV3 Axin interactor, dorsalization-associated protein OS=Pongo abelii GN=AIDA PE=2 SV=1
Evalue: 1e-08 | Bitscore: 63
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
SwissP
Show Blast
Q96BJ3 Axin interactor, dorsalization-associated protein OS=Homo sapiens GN=AIDA PE=1 SV=1
Evalue: 1e-08 | Bitscore: 63
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
SwissP
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy11g02450
Redo Blast
CDS Length
4824 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy11g02450
Redo Blast
Protein Length
1608 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_9.clus410.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information