Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy11g02200
Locus
Bathy11g02200
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_11
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR006668 Magnesium transporter, MgtE intracellular domain InterPro
G3DSA:1.25.60.10 no description Gene3D
IPR001298 Filamin/ABP280 repeat InterPro
IPR013783 Immunoglobulin-like fold InterPro
IPR017868 Filamin/ABP280 repeat-like InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003081643.1 filamin (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1945
Identities = 1088/2317 (47%), Positives = 1453/2317 (63%), Gaps = 163/2317 (7%)
NCBI
Show Blast
XP_002503840.1 predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 1711
Identities = 972/2126 (46%), Positives = 1295/2126 (61%), Gaps = 162/2126 (8%)
NCBI
Show Blast
XP_001419978.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-20 | Bitscore: 108
Identities = 80/176 (45%), Positives = 106/176 (60%), Gaps = 21/176 (12%)
NCBI
Show Blast
EGC39028.1 hypothetical protein DICPUDRAFT_91322 [Dictyostelium purpureum]
Evalue: 4e-20 | Bitscore: 108
Identities = 140/542 (26%), Positives = 218/542 (40%), Gaps = 55/542 (10%)
NCBI
Show Blast
XP_002677307.1 ras GTPase-activating-like protein IQGAP3 [Naegleria gruberi]
Evalue: 6e-17 | Bitscore: 97
Identities = 102/424 (24%), Positives = 172/424 (41%), Gaps = 47/424 (11%)
NCBI
Show Blast
XP_003055106.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 8e-15 | Bitscore: 90
Identities = 43/85 (51%), Positives = 57/85 (67%), Gaps = 0/85 (0%)
NCBI
Show Blast
CCA24582.1 conserved hypothetical protein [Albugo laibachii Nc14]
Evalue: 2e-13 | Bitscore: 86
Identities = 137/603 (23%), Positives = 234/603 (39%), Gaps = 88/603 (15%)
NCBI
Show Blast
P13466 Gelation factor OS=Dictyostelium discoideum GN=abpC PE=1 SV=1
Evalue: 2e-14 | Bitscore: 84
Identities = 148/615 (24%), Positives = 235/615 (38%), Gaps = 84/615 (13%)
SwissP
Show Blast
EFA84721.1 gelation factor [Polysphondylium pallidum PN500]
Evalue: 6e-13 | Bitscore: 84
Identities = 116/513 (23%), Positives = 186/513 (36%), Gaps = 57/513 (11%)
NCBI
Show Blast
XP_002905239.1 conserved hypothetical protein [Phytophthora infestans T30-4]
Evalue: 2e-10 | Bitscore: 75
Identities = 95/370 (26%), Positives = 155/370 (42%), Gaps = 41/370 (11%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy11g02200
Redo Blast
CDS Length
16179 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy11g02200
Redo Blast
Protein Length
5393 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_9.clus363.Contig1 Support ModelY More Info
EST IDSuperContig_9.clus615.Contig1 Support ModelY More Info
EST IDSuperContig_9.clus427.Contig1 Support ModelY More Info