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Bathycoccus prasinos


Gene ID
Bathy11g01230
Locus
Bathy11g01230
Functional Description
thioredoxin
Gene Type
protein-coding gene
Contig
bathy_chrom_11
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
thioredoxin
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
IPR013766 Thioredoxin domain InterPro
IPR017937 Thioredoxin, conserved site InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001419941.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-30 | Bitscore: 135
Identities = 69/124 (56%), Positives = 82/124 (66%), Gaps = 30/124 (24%)		 NCBI
Show Blast
XP_002503541.1 predicted protein [Micromonas sp. RCC299]
Evalue: 8e-26 | Bitscore: 120
Identities = 73/124 (59%), Positives = 82/124 (66%), Gaps = 30/124 (24%)		 NCBI
Show Blast
XP_002180660.1 thioredoxin h [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 3e-24 | Bitscore: 115
Identities = 60/124 (48%), Positives = 74/124 (60%), Gaps = 28/124 (23%)		 NCBI
Show Blast
XP_003055592.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-21 | Bitscore: 103
Identities = 78/169 (46%), Positives = 90/169 (53%), Gaps = 45/169 (27%)		 NCBI
Show Blast
NP_001123670.1 hypothetical protein LOC100170420 [Xenopus (Silurana) tropicalis]
Evalue: 3e-20 | Bitscore: 101
Identities = 56/124 (45%), Positives = 68/124 (55%), Gaps = 30/124 (24%)		 NCBI
Show Blast
XP_002292444.1 thioredoxin [Thalassiosira pseudonana CCMP1335]
Evalue: 5e-20 | Bitscore: 100
Identities = 55/123 (45%), Positives = 72/123 (59%), Gaps = 28/123 (23%)		 NCBI
Show Blast
EFW44919.1 hypothetical protein CAOG_02925 [Capsaspora owczarzaki ATCC 30864]
Evalue: 1e-19 | Bitscore: 99
Identities = 49/77 (64%), Positives = 58/77 (75%), Gaps = 1/77 (1%)		 NCBI
Show Blast
NP_001085522.1 MGC80314 protein [Xenopus laevis]
Evalue: 1e-19 | Bitscore: 99
Identities = 45/90 (50%), Positives = 60/90 (67%), Gaps = 4/90 (4%)		 NCBI
Show Blast
XP_002600511.1 hypothetical protein BRAFLDRAFT_205508 [Branchiostoma floridae]
Evalue: 2e-19 | Bitscore: 99
Identities = 53/92 (58%), Positives = 59/92 (64%), Gaps = 1/92 (1%)		 NCBI
Show Blast
ACJ12082.1 thioredoxin [Bombina orientalis]
Evalue: 2e-19 | Bitscore: 99
Identities = 46/75 (61%), Positives = 56/75 (75%), Gaps = 1/75 (1%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy11g01230
Redo Blast
CDS Length
408 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy11g01230
Redo Blast
Protein Length
136 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a