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Bathycoccus prasinos


Gene ID
Bathy10g04170
Locus
Bathy10g04170
Functional Description
thioredoxin peroxidase
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
thioredoxin peroxidase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR019479 Peroxiredoxin, C-terminal InterPro
IPR012335 Thioredoxin fold InterPro
IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant InterPro
PTHR10681 THIOREDOXIN PEROXIDASE HMMPanther
IPR017936 Thioredoxin-like InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002506055.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-81 | Bitscore: 306
Identities = 146/193 (76%), Positives = 162/193 (84%), Gaps = 2/193 (1%)		 NCBI
Show Blast
XP_001419466.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-80 | Bitscore: 303
Identities = 148/211 (70%), Positives = 171/211 (81%), Gaps = 5/211 (2%)		 NCBI
Show Blast
XP_003057090.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-80 | Bitscore: 301
Identities = 141/193 (73%), Positives = 163/193 (84%), Gaps = 2/193 (1%)		 NCBI
Show Blast
XP_002280930.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-79 | Bitscore: 300
Identities = 138/198 (70%), Positives = 162/198 (82%), Gaps = 0/198 (0%)		 NCBI
Show Blast
XP_003080999.1 thioredoxin peroxidase (ISS) [Ostreococcus tauri]
Evalue: 1e-79 | Bitscore: 300
Identities = 154/235 (66%), Positives = 182/235 (77%), Gaps = 10/235 (4%)		 NCBI
Show Blast
CAN67408.1 hypothetical protein VITISV_025619 [Vitis vinifera]
Evalue: 2e-79 | Bitscore: 300
Identities = 137/195 (70%), Positives = 161/195 (83%), Gaps = 0/195 (0%)		 NCBI
Show Blast
CBI30370.3 unnamed protein product [Vitis vinifera]
Evalue: 2e-79 | Bitscore: 299
Identities = 137/195 (70%), Positives = 161/195 (83%), Gaps = 0/195 (0%)		 NCBI
Show Blast
XP_001422957.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-79 | Bitscore: 298
Identities = 141/193 (73%), Positives = 162/193 (84%), Gaps = 2/193 (1%)		 NCBI
Show Blast
ACR37877.1 unknown [Zea mays]
Evalue: 1e-78 | Bitscore: 296
Identities = 135/202 (67%), Positives = 161/202 (80%), Gaps = 0/202 (0%)		 NCBI
Show Blast
XP_002980862.1 hypothetical protein SELMODRAFT_420519 [Selaginella moellendorffii]
Evalue: 2e-78 | Bitscore: 296
Identities = 143/233 (61%), Positives = 173/233 (74%), Gaps = 4/233 (2%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g04170
Redo Blast
CDS Length
714 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g04170
Redo Blast
Protein Length
238 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a