Bathycoccus prasinos

Home

Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Navigation

Blast Search

Annotator
Gene Actions
Linkout
Gene Function
Gene Ontology
Protein Domains
Protein Homologs
Gene Structure
Alt Models
Cds
Protein
Est Cdna

Bathycoccus prasinos

Gene ID: Bathy10g04150
Locus: Bathy10g04150
Functional Description: thioredoxin reductase
Gene Type: protein-coding gene
Contig: bathy_chrom_10
Last Modified On: 12 July 2011 21h39
History

Annotator
Top

Name: EuGene Automatic Prediction
Email: beg-orcae@psb.ugent.be
Lab: UGent
Status: active

Gene Actions
Top

Sorry, only history comparison allowed for non logged in users!!

Compare this version with :
Go!

Link Out
Top

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function
Top

Short Name: n/a
Alternative Names: n/a
Definition: thioredoxin reductase
Additional Functional Description: n/a
Pubmed ID: n/a
EC Number: n/a
KOGid: n/a

Gene Ontology
Top

Cellular Component: n/a
Molecular Function: n/a
Biological Process: 1.

GO:0045454

cell redox homeostasis

Protein Domains
Top

Domain ID	Description	Database
IPR013027	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	InterPro
IPR000103	Pyridine nucleotide-disulphide oxidoreductase, class-II	InterPro
IPR012335	Thioredoxin fold	InterPro
IPR005982	Thioredoxin reductase	InterPro
PTHR22912	FAMILY NOT NAMED	HMMPanther
IPR013766	Thioredoxin domain	InterPro
IPR017937	Thioredoxin, conserved site	InterPro
IPR008255	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	InterPro
IPR001327	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region	InterPro
G3DSA:3.50.50.60	no description	Gene3D
IPR017936	Thioredoxin-like	InterPro
SSF51905	FAD/NAD(P)-binding domain	superfamily

Protein Homologs
Top

View in Jalview

ProteinID	Description / BlastScore	Database	Actions
XP_001422184.1	predicted protein [Ostreococcus lucimarinus CCE9901] Evalue: 9e-163 \| Bitscore: 578 Identities = 283/461 (61%), Positives = 349/461 (76%), Gaps = 11/461 (2%)	NCBI	Show Blast
XP_003084056.1	NADPH thioredoxin reductase (ISS) [Ostreococcus tauri] Evalue: 4e-158 \| Bitscore: 562 Identities = 276/464 (59%), Positives = 338/464 (73%), Gaps = 27/464 (6%)	NCBI	Show Blast
BAH29954.1	chloroplastic NADPH-dependent thioredoxin reductase [Chlorella vulgaris] Evalue: 3e-157 \| Bitscore: 560 Identities = 271/462 (59%), Positives = 340/462 (74%), Gaps = 7/462 (2%)	NCBI	Show Blast
XP_003064472.1	predicted protein [Micromonas pusilla CCMP1545] Evalue: 5e-157 \| Bitscore: 559 Identities = 279/462 (60%), Positives = 339/462 (73%), Gaps = 26/462 (6%)	NCBI	Show Blast
XP_002308935.1	predicted protein [Populus trichocarpa] Evalue: 1e-155 \| Bitscore: 555 Identities = 266/460 (58%), Positives = 342/460 (74%), Gaps = 19/460 (4%)	NCBI	Show Blast
ABR17696.1	unknown [Picea sitchensis] Evalue: 6e-155 \| Bitscore: 552 Identities = 266/461 (58%), Positives = 339/461 (74%), Gaps = 25/461 (5%)	NCBI	Show Blast
NP_565954.1	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase [Arabidopsis thaliana] Evalue: 7e-155 \| Bitscore: 552 Identities = 265/457 (58%), Positives = 339/457 (74%), Gaps = 19/457 (4%)	NCBI	Show Blast
XP_002881790.1	predicted protein [Arabidopsis lyrata subsp. lyrata] Evalue: 7e-155 \| Bitscore: 552 Identities = 264/457 (58%), Positives = 340/457 (74%), Gaps = 19/457 (4%)	NCBI	Show Blast
AAL08250.1	At2g41680/T32G6.20 [Arabidopsis thaliana] Evalue: 2e-154 \| Bitscore: 550 Identities = 264/457 (58%), Positives = 339/457 (74%), Gaps = 19/457 (4%)	NCBI	Show Blast
Q70G58	Thioredoxin reductase NTRC OS=Oryza sativa subsp. japonica GN=Os07g0657900 PE=1 SV=2 Evalue: 1e-154 \| Bitscore: 546 Identities = 268/458 (58%), Positives = 336/458 (73%), Gaps = 25/458 (5%)	SwissP	Show Blast

Gene Structure
Top

View in GenomeView|View in Artemini

Download gene in EMBL format

Structure: ;772128..773831;
Sequence Type: mRNA
Strand: +
Structure Quality: 2

Alternative Models
Top

n/a

CDS
Top

Locus ID: Bathy10g04150
: Redo Blast
CDS Length: 1704 nucleotides
CDS Sequence: ATGAGGAGCACAACCAGTTTTGGTAGTACGAGCACAAGTAGTAGCAAAAGTAGTTTTTGTCGAACGATTTGCACCCAGCTCTCTTCCTCCTCCTTCTCCACCATCGCGAGAGGAGGAAGAAGTAGGAGAAGAAGCAACAACAGTAAAAGTCACAATCATCATCATCAGCTTTTCCACCACTCGCAACCGCGACAACAACAACATCGACACAGAAAGTTCCGGAACGATAAAATTCGTGCATCGTCGTCGACTTCTCCAGATAATGATGTTGGTGACAACGACGACGTAAAAAATGTTGTAATCATTGGATCGGGGCCGGCTGGGTACACGGCGGCAATATATACAGGCAGAGCAAACTTGGCGCCGGTATGTTTTGAAGGATTTCAGAGCGGCGGCGTCGCTGGAGGTCAGTTAATGAGCACGACCGAGGTTGAAAACTATCCAGGCTTCCCTGAAGGCGTGACCGGACCGGAGTTGATGGAGCGAATGCGTCAACAAGCCTTGCGATGGGGCGCGGAATTATACGAAGAAGACGTCGTCAGCGTTGATTTTTCGAAGCGACCGTTGGAAATCAAATCCGAAGATCGCACGATGAGAGCGAACGCGATCATTTTAGCCACCGGGGCGACGGCGAAGCGTTTACGCATCCCGAGCGAGGAGAAATTTTGGAGTAAAGGCATCTCCGCGTGTGCGATTTGCGACGGCGCTTCGCCCGCTTTCGCGCAAAAAGAACTCGCAGTCGTGGGCGGTGGCGATTCCGCGTGCGAAGAGGCGATTTATTTGACGAAATACGCCTCTAAGGTTCACTTGCTCGTCAGAGGCGAAGAGATGAGAGCTTCCAAGGCGATGAGAGACCGGGTGTTGGATTCTTCAGACGTGATAGTGCACTACAACACGTCCGTCGAAGATGCGGCAGGTAATGCGCAAGGCTTCTTAGAAAGTCTCAAACTCGTAAACACGAAAACAAATGAATCTATTCCGGAGCCTCTGAAAGTTGCCGGCATGTTCTACGGTATTGGACACACGCCGAATACAAAGTTTCTCGACTCGCAACTAGGCACCGACGAGGACGGTTTCATCATCGTCAGCGATCACGACAAGACATCCACCTCCGTAGAAGGCGTTTTCTCAGCCGGTGACGTGCACGATAAAGAATGGCGACAAGCCATAACAGCGGCTGGGAGCGGATGCCAAGCGGCCATCTCTACGGAAAGATATCTGCAAATGAACAAGCTGTTGAAAGAAGTCAAGATGATGGATACCAAGGACGCGAAAGAAGAAATCGAAGCCGCGAAGAAGAAAGAAGCGGAAGCGCCGAAAAAGAAGACGCACGAACCTGCGATTGATGCGGATAACTTTGATATAGATAGACAAAAACATCAAGGCCAATACGCGTTGCGAAAATTGTACCACGAATCGCCTCGTCCTTTAGTCGTGATGTACACGAGCCCGACGTGCGGCCCGTGTAAACGACTGAAACCGATGCTCAGTACAGTGCTCGACGAGTACGAGAAATCCATCCATTACGTCGAAATTGACATCGCAAAAGATCCCGAGATTGCCGAATCCGCTGGTATTATGGGCACTCCGTGCGTGCAAGTGTTTAAAGATAAAGCCAGAGTGGCGGTCATCAACGGCGTCAAGATGAAGAGCGAATATAGAAAAATTTTCAGCGAACAGTTGATTGAGAGTTCCGCCGCTTAA

Protein
Top

Locus ID: Bathy10g04150
: Redo Blast
Protein Length: 568 aminoacids
Protein Sequence: MRSTTSFGSTSTSSSKSSFCRTICTQLSSSSFSTIARGGRSRRRSNNSKSHNHHHQLFHHSQPRQQQHRHRKFRNDKIRASSSTSPDNDVGDNDDVKNVVIIGSGPAGYTAAIYTGRANLAPVCFEGFQSGGVAGGQLMSTTEVENYPGFPEGVTGPELMERMRQQALRWGAELYEEDVVSVDFSKRPLEIKSEDRTMRANAIILATGATAKRLRIPSEEKFWSKGISACAICDGASPAFAQKELAVVGGGDSACEEAIYLTKYASKVHLLVRGEEMRASKAMRDRVLDSSDVIVHYNTSVEDAAGNAQGFLESLKLVNTKTNESIPEPLKVAGMFYGIGHTPNTKFLDSQLGTDEDGFIIVSDHDKTSTSVEGVFSAGDVHDKEWRQAITAAGSGCQAAISTERYLQMNKLLKEVKMMDTKDAKEEIEAAKKKEAEAPKKKTHEPAIDADNFDIDRQKHQGQYALRKLYHESPRPLVVMYTSPTCGPCKRLKPMLSTVLDEYEKSIHYVEIDIAKDPEIAESAGIMGTPCVQVFKDKARVAVINGVKMKSEYRKIFSEQLIESSAA*
Signal Peptide: n/a
Subcellular Localisation: n/a

Associated ESTs/cDNAs
Top

View in GenomeView|View in Artemini

EST ID	SuperContig_8.clus344.Contig1	Support Model	Y	More Info
Mapping Location	773239..773612		Strand +

Annotator Top

Gene Actions Top

Link Out Top

Gene Function Top

Gene Ontology Top

Protein Domains Top

Protein Homologs Top

Gene Structure Top

Alternative Models Top

CDS Top

Protein Top

Associated ESTs/cDNAs Top