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Bathycoccus prasinos


Gene ID
Bathy10g02410
Locus
Bathy10g02410
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR003609 Apple-like InterPro
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR003014 PAN-1 domain InterPro
IPR011889 Bacterial surface protein 26-residue repeat InterPro
IPR005046 Protein of unknown function DUF285, lipoprotein predicted InterPro
SSF57414 Hairpin loop containing domain-like superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003063611.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-78 | Bitscore: 301
Identities = 166/355 (47%), Positives = 207/355 (58%), Gaps = 13/355 (4%)
NCBI
Show Blast
XP_003060637.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-78 | Bitscore: 301
Identities = 167/363 (46%), Positives = 204/363 (56%), Gaps = 25/363 (7%)
NCBI
Show Blast
XP_003057609.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-78 | Bitscore: 301
Identities = 171/346 (49%), Positives = 212/346 (61%), Gaps = 29/346 (8%)
NCBI
Show Blast
XP_002509285.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-78 | Bitscore: 301
Identities = 175/352 (50%), Positives = 212/352 (60%), Gaps = 10/352 (3%)
NCBI
Show Blast
XP_003060638.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-74 | Bitscore: 288
Identities = 161/345 (47%), Positives = 202/345 (59%), Gaps = 26/345 (8%)
NCBI
Show Blast
YP_003569744.1 Conserved hypothetical protein containing Fibronectin, type III domain [Salinibacter ruber M8]
Evalue: 2e-73 | Bitscore: 284
Identities = 168/390 (43%), Positives = 213/390 (55%), Gaps = 30/390 (8%)
NCBI
Show Blast
XP_003056257.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 8e-71 | Bitscore: 276
Identities = 180/466 (39%), Positives = 226/466 (48%), Gaps = 101/466 (22%)
NCBI
Show Blast
XP_002502684.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-69 | Bitscore: 271
Identities = 171/354 (48%), Positives = 196/354 (55%), Gaps = 38/354 (11%)
NCBI
Show Blast
XP_002501254.1 predicted protein [Micromonas sp. RCC299]
Evalue: 6e-69 | Bitscore: 269
Identities = 163/361 (45%), Positives = 207/361 (57%), Gaps = 31/361 (9%)
NCBI
Show Blast
XP_002502681.1 predicted protein [Micromonas sp. RCC299]
Evalue: 3e-67 | Bitscore: 264
Identities = 165/375 (44%), Positives = 190/375 (51%), Gaps = 55/375 (15%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g02410
Redo Blast
CDS Length
12555 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g02410
Redo Blast
Protein Length
4185 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_8.clus8.Contig1 Support ModelY More Info