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Bathycoccus prasinos


Gene ID
Bathy10g01870
Locus
Bathy10g01870
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
tRNA binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR012340 Nucleic acid-binding, OB-fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
PTHR11946 FAMILY NOT NAMED HMMPanther
IPR002547 tRNA-binding domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003081255.1 methionyl-tRNA synthetase-like protein (ISS) [Ostreococcus tauri]
Evalue: 1e-57 | Bitscore: 229
Identities = 109/163 (67%), Positives = 125/163 (77%), Gaps = 0/163 (0%)		 NCBI
Show Blast
XP_002505984.1 predicted protein [Micromonas sp. RCC299]
Evalue: 7e-50 | Bitscore: 202
Identities = 100/147 (68%), Positives = 111/147 (76%), Gaps = 0/147 (0%)		 NCBI
Show Blast
XP_003057171.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-50 | Bitscore: 202
Identities = 99/163 (61%), Positives = 118/163 (72%), Gaps = 0/163 (0%)		 NCBI
Show Blast
XP_001419580.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-47 | Bitscore: 195
Identities = 93/141 (66%), Positives = 110/141 (78%), Gaps = 0/141 (0%)		 NCBI
Show Blast
NP_001148468.1 LOC100282083 [Zea mays]
Evalue: 1e-44 | Bitscore: 185
Identities = 125/342 (37%), Positives = 195/342 (57%), Gaps = 21/342 (6%)		 NCBI
Show Blast
NP_565938.1 tRNA-binding region domain-containing protein [Arabidopsis thaliana]
Evalue: 2e-44 | Bitscore: 184
Identities = 92/163 (56%), Positives = 121/163 (74%), Gaps = 0/163 (0%)		 NCBI
Show Blast
XP_001764218.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-44 | Bitscore: 184
Identities = 90/160 (56%), Positives = 113/160 (71%), Gaps = 0/160 (0%)		 NCBI
Show Blast
XP_002325488.1 predicted protein [Populus trichocarpa]
Evalue: 1e-43 | Bitscore: 182
Identities = 89/163 (55%), Positives = 118/163 (72%), Gaps = 0/163 (0%)		 NCBI
Show Blast
XP_002520877.1 methionyl-tRNA synthetase, putative [Ricinus communis]
Evalue: 1e-43 | Bitscore: 182
Identities = 91/163 (56%), Positives = 117/163 (72%), Gaps = 0/163 (0%)		 NCBI
Show Blast
XP_002879883.1 tRNA-binding region domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Evalue: 1e-43 | Bitscore: 181
Identities = 91/163 (56%), Positives = 119/163 (73%), Gaps = 0/163 (0%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g01870
Redo Blast
CDS Length
1344 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g01870
Redo Blast
Protein Length
448 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_8.clus183.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information