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Bathycoccus prasinos


Gene ID
Bathy10g01780
Locus
Bathy10g01780
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR13890 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002505988.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-18 | Bitscore: 99
Identities = 153/508 (30%), Positives = 222/508 (44%), Gaps = 116/508 (23%)
NCBI
Show Blast
XP_001419796.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-13 | Bitscore: 83
Identities = 111/398 (28%), Positives = 184/398 (46%), Gaps = 48/398 (12%)
NCBI
Show Blast
XP_003081263.1 unnamed protein product [Ostreococcus tauri]
Evalue: 1e-12 | Bitscore: 79
Identities = 126/479 (26%), Positives = 208/479 (43%), Gaps = 93/479 (19%)
NCBI
Show Blast
XP_003057162.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-07 | Bitscore: 62
Identities = 83/228 (36%), Positives = 118/228 (52%), Gaps = 32/228 (14%)
NCBI
Show Blast
XP_001775893.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 5e-07 | Bitscore: 60
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 12/199 (6%)
NCBI
Show Blast
XP_002993850.1 hypothetical protein SELMODRAFT_431872 [Selaginella moellendorffii]
Evalue: 4e-05 | Bitscore: 54
Identities = 90/354 (25%), Positives = 148/354 (42%), Gaps = 43/354 (12%)
NCBI
Show Blast
EFN55977.1 hypothetical protein CHLNCDRAFT_145324 [Chlorella variabilis]
Evalue: 6e-05 | Bitscore: 53
Identities = 74/304 (24%), Positives = 133/304 (44%), Gaps = 32/304 (11%)
NCBI
Show Blast
XP_002991413.1 hypothetical protein SELMODRAFT_429777 [Selaginella moellendorffii]
Evalue: 0.0002 | Bitscore: 52
Identities = 65/215 (30%), Positives = 100/215 (47%), Gaps = 27/215 (13%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g01780
Redo Blast
CDS Length
1524 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g01780
Redo Blast
Protein Length
508 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a