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Bathycoccus prasinos


Gene ID
Bathy10g01250
Locus
Bathy10g01250
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR10891 EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN HMMPanther
IPR002048 Calcium-binding EF-hand InterPro
IPR011992 EF-hand-like domain InterPro
IPR018248 EF-hand InterPro
SSF47473 EF-hand superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003081315.1 Nuclear pore complex component (sc Seh1) (ISS) [Ostreococcus tauri]
Evalue: 1e-24 | Bitscore: 118
Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 2/131 (2%)		 NCBI
Show Blast
XP_001419609.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-24 | Bitscore: 117
Identities = 62/122 (51%), Positives = 85/122 (70%), Gaps = 2/122 (2%)		 NCBI
Show Blast
AAK13107.1 Centrin [Oryza sativa Japonica Group]
Evalue: 1e-05 | Bitscore: 55
Identities = 30/82 (37%), Positives = 48/82 (59%), Gaps = 2/82 (2%)		 NCBI
Show Blast
ACN40674.1 unknown [Picea sitchensis]
Evalue: 2e-05 | Bitscore: 54
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (3%)		 NCBI
Show Blast
ABR17333.1 unknown [Picea sitchensis]
Evalue: 2e-05 | Bitscore: 54
Identities = 41/137 (30%), Positives = 66/137 (48%), Gaps = 12/137 (9%)		 NCBI
Show Blast
CAA04528.1 calmodulin-like protein [Branchiostoma lanceolatum]
Evalue: 3e-05 | Bitscore: 54
Identities = 31/73 (42%), Positives = 43/73 (59%), Gaps = 7/73 (10%)		 NCBI
Show Blast
Q338P8 Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1
Evalue: 3e-06 | Bitscore: 53
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)		 SwissP
Show Blast
XP_002504838.1 predicted protein [Micromonas sp. RCC299]
Evalue: 4e-05 | Bitscore: 53
Identities = 27/72 (38%), Positives = 45/72 (63%), Gaps = 2/72 (3%)		 NCBI
Show Blast
NP_001064498.2 Os10g0389000 [Oryza sativa Japonica Group]
Evalue: 5e-05 | Bitscore: 53
Identities = 30/82 (37%), Positives = 48/82 (59%), Gaps = 2/82 (2%)		 NCBI
Show Blast
EAY78320.1 hypothetical protein OsI_33398 [Oryza sativa Indica Group]
Evalue: 5e-05 | Bitscore: 53
Identities = 28/82 (34%), Positives = 48/82 (59%), Gaps = 2/82 (2%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g01250
Redo Blast
CDS Length
1080 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g01250
Redo Blast
Protein Length
360 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a