- Gene ID
- Bathy10g01250
- Locus
- Bathy10g01250
- Functional Description
- predicted protein
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_10
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- predicted protein
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Domain ID | Description | Database |
IPR018247 |
EF-Hand 1, calcium-binding site |
InterPro |
IPR018249 |
EF-HAND 2 |
InterPro |
PTHR10891 |
EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
HMMPanther |
IPR002048 |
Calcium-binding EF-hand |
InterPro |
IPR011992 |
EF-hand-like domain |
InterPro |
IPR018248 |
EF-hand |
InterPro |
SSF47473 |
EF-hand |
superfamily |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
XP_003081315.1 |
Nuclear pore complex component (sc Seh1) (ISS) [Ostreococcus tauri]
Evalue: 1e-24 | Bitscore: 118 Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 2/131 (2%) |
NCBI |
Show Blast
|
XP_001419609.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-24 | Bitscore: 117 Identities = 62/122 (51%), Positives = 85/122 (70%), Gaps = 2/122 (2%) |
NCBI |
Show Blast
|
AAK13107.1 |
Centrin [Oryza sativa Japonica Group]
Evalue: 1e-05 | Bitscore: 55 Identities = 30/82 (37%), Positives = 48/82 (59%), Gaps = 2/82 (2%) |
NCBI |
Show Blast
|
ACN40674.1 |
unknown [Picea sitchensis]
Evalue: 2e-05 | Bitscore: 54 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (3%) |
NCBI |
Show Blast
|
ABR17333.1 |
unknown [Picea sitchensis]
Evalue: 2e-05 | Bitscore: 54 Identities = 41/137 (30%), Positives = 66/137 (48%), Gaps = 12/137 (9%) |
NCBI |
Show Blast
|
CAA04528.1 |
calmodulin-like protein [Branchiostoma lanceolatum]
Evalue: 3e-05 | Bitscore: 54 Identities = 31/73 (42%), Positives = 43/73 (59%), Gaps = 7/73 (10%) |
NCBI |
Show Blast
|
Q338P8 |
Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1
Evalue: 3e-06 | Bitscore: 53 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%) |
SwissP |
Show Blast
|
XP_002504838.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-05 | Bitscore: 53 Identities = 27/72 (38%), Positives = 45/72 (63%), Gaps = 2/72 (3%) |
NCBI |
Show Blast
|
NP_001064498.2 |
Os10g0389000 [Oryza sativa Japonica Group]
Evalue: 5e-05 | Bitscore: 53 Identities = 30/82 (37%), Positives = 48/82 (59%), Gaps = 2/82 (2%) |
NCBI |
Show Blast
|
EAY78320.1 |
hypothetical protein OsI_33398 [Oryza sativa Indica Group]
Evalue: 5e-05 | Bitscore: 53 Identities = 28/82 (34%), Positives = 48/82 (59%), Gaps = 2/82 (2%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
XP_003081315.1 |
Nuclear pore complex component (sc Seh1) (ISS) [Ostreococcus tauri]
Evalue: 1e-24 | Bitscore: 118 Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 2/131 (2%) |
NCBI |
Show Blast
|
XP_001419609.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-24 | Bitscore: 117 Identities = 62/122 (51%), Positives = 85/122 (70%), Gaps = 2/122 (2%) |
NCBI |
Show Blast
|
AAK13107.1 |
Centrin [Oryza sativa Japonica Group]
Evalue: 1e-05 | Bitscore: 55 Identities = 30/82 (37%), Positives = 48/82 (59%), Gaps = 2/82 (2%) |
NCBI |
Show Blast
|
ACN40674.1 |
unknown [Picea sitchensis]
Evalue: 2e-05 | Bitscore: 54 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (3%) |
NCBI |
Show Blast
|
ABR17333.1 |
unknown [Picea sitchensis]
Evalue: 2e-05 | Bitscore: 54 Identities = 41/137 (30%), Positives = 66/137 (48%), Gaps = 12/137 (9%) |
NCBI |
Show Blast
|
CAA04528.1 |
calmodulin-like protein [Branchiostoma lanceolatum]
Evalue: 3e-05 | Bitscore: 54 Identities = 31/73 (42%), Positives = 43/73 (59%), Gaps = 7/73 (10%) |
NCBI |
Show Blast
|
XP_002504838.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-05 | Bitscore: 53 Identities = 27/72 (38%), Positives = 45/72 (63%), Gaps = 2/72 (3%) |
NCBI |
Show Blast
|
NP_001064498.2 |
Os10g0389000 [Oryza sativa Japonica Group]
Evalue: 5e-05 | Bitscore: 53 Identities = 30/82 (37%), Positives = 48/82 (59%), Gaps = 2/82 (2%) |
NCBI |
Show Blast
|
EAY78320.1 |
hypothetical protein OsI_33398 [Oryza sativa Indica Group]
Evalue: 5e-05 | Bitscore: 53 Identities = 28/82 (34%), Positives = 48/82 (59%), Gaps = 2/82 (2%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Q338P8 |
Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1
Evalue: 3e-06 | Bitscore: 53 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%) |
SwissP |
Show Blast
|
Q06850 |
Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1
Evalue: 6e-05 | Bitscore: 48 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%) |
SwissP |
Show Blast
|
Q38870 |
Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1
Evalue: 0.0001 | Bitscore: 47 Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%) |
SwissP |
Show Blast
|
P05933 |
Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1
Evalue: 0.0003 | Bitscore: 46 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 6/82 (7%) |
SwissP |
Show Blast
|
P04353 |
Calmodulin OS=Spinacia oleracea PE=1 SV=2
Evalue: 0.0005 | Bitscore: 45 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) |
SwissP |
Show Blast
|
Q0JNS6 |
Calmodulin-1 OS=Oryza sativa subsp. japonica GN=CAM1-1 PE=1 SV=2
Evalue: 0.0006 | Bitscore: 45 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) |
SwissP |
Show Blast
|
Q0JNL7 |
Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CAM3 PE=2 SV=1
Evalue: 0.0006 | Bitscore: 45 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) |
SwissP |
Show Blast
|
P62162 |
Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2
Evalue: 0.0006 | Bitscore: 45 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) |
SwissP |
Show Blast
|
Q6F332 |
Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3
Evalue: 0.0006 | Bitscore: 45 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) |
SwissP |
Show Blast
|
P62163 |
Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2
Evalue: 0.0006 | Bitscore: 45 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
- n/a
-
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