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Bathycoccus prasinos


Gene ID
Bathy10g01110
Locus
Bathy10g01110
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR001841 Zinc finger, RING-type InterPro
IPR018249 EF-HAND 2 InterPro
IPR013083 Zinc finger, RING/FYVE/PHD-type InterPro
PTHR10891 EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN HMMPanther
IPR011992 EF-hand-like domain InterPro
IPR002048 Calcium-binding EF-hand InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001419823.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-43 | Bitscore: 181
Identities = 100/297 (34%), Positives = 156/297 (53%), Gaps = 56/297 (19%)
NCBI
Show Blast
XP_003081333.1 unnamed protein product [Ostreococcus tauri]
Evalue: 2e-39 | Bitscore: 168
Identities = 99/345 (29%), Positives = 166/345 (48%), Gaps = 69/345 (20%)
NCBI
Show Blast
XP_002502215.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-38 | Bitscore: 165
Identities = 87/194 (45%), Positives = 128/194 (66%), Gaps = 6/194 (3%)
NCBI
Show Blast
XP_002768532.1 hypothetical protein Pmar_PMAR020156 [Perkinsus marinus ATCC 50983]
Evalue: 7e-25 | Bitscore: 119
Identities = 86/300 (29%), Positives = 134/300 (45%), Gaps = 64/300 (21%)
NCBI
Show Blast
EGB09898.1 hypothetical protein AURANDRAFT_62958 [Aureococcus anophagefferens]
Evalue: 1e-23 | Bitscore: 115
Identities = 68/199 (34%), Positives = 105/199 (53%), Gaps = 10/199 (5%)
NCBI
Show Blast
XP_003059537.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 8e-14 | Bitscore: 83
Identities = 35/80 (44%), Positives = 50/80 (63%), Gaps = 1/80 (1%)
NCBI
Show Blast
CBJ32479.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 3e-09 | Bitscore: 68
Identities = 32/87 (37%), Positives = 52/87 (60%), Gaps = 1/87 (1%)
NCBI
Show Blast
XP_002766805.1 hypothetical protein Pmar_PMAR026888 [Perkinsus marinus ATCC 50983]
Evalue: 7e-05 | Bitscore: 53
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 2/42 (5%)
NCBI
Show Blast
XP_002673387.1 predicted protein [Naegleria gruberi]
Evalue: 0.001 | Bitscore: 49
Identities = 42/163 (26%), Positives = 68/163 (42%), Gaps = 35/163 (21%)
NCBI
Show Blast
XP_002779381.1 hypothetical protein Pmar_PMAR015098 [Perkinsus marinus ATCC 50983]
Evalue: 0.003 | Bitscore: 48
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g01110
Redo Blast
CDS Length
1386 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g01110
Redo Blast
Protein Length
462 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_8.clus358.Contig1 Support ModelY More Info
EST IDSuperContig_8.clus358.Contig2 Support ModelY More Info