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Bathycoccus prasinos


Gene ID
Bathy10g01080
Locus
Bathy10g01080
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002505077.1 predicted protein [Micromonas sp. RCC299]
Evalue: 7e-26 | Bitscore: 122
Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 16/239 (7%)		 NCBI
Show Blast
XP_001778018.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-24 | Bitscore: 117
Identities = 75/228 (33%), Positives = 120/228 (53%), Gaps = 15/228 (7%)		 NCBI
Show Blast
XP_002947178.1 hypothetical protein VOLCADRAFT_56687 [Volvox carteri f. nagariensis]
Evalue: 4e-22 | Bitscore: 109
Identities = 74/228 (32%), Positives = 118/228 (52%), Gaps = 13/228 (6%)		 NCBI
Show Blast
ADE75690.1 unknown [Picea sitchensis]
Evalue: 4e-21 | Bitscore: 106
Identities = 81/236 (34%), Positives = 122/236 (52%), Gaps = 23/236 (10%)		 NCBI
Show Blast
NP_001152125.1 glutathione S-transferase theta-1 [Zea mays]
Evalue: 7e-21 | Bitscore: 105
Identities = 77/241 (32%), Positives = 118/241 (49%), Gaps = 21/241 (9%)		 NCBI
Show Blast
NP_198937.1 ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1); glutathione transferase [Arabidopsis thaliana]
Evalue: 2e-20 | Bitscore: 103
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 15/213 (7%)		 NCBI
Show Blast
NP_001068175.1 Os11g0588300 [Oryza sativa Japonica Group]
Evalue: 3e-20 | Bitscore: 103
Identities = 77/248 (31%), Positives = 123/248 (50%), Gaps = 19/248 (8%)		 NCBI
Show Blast
XP_002868607.1 hypothetical protein ARALYDRAFT_916086 [Arabidopsis lyrata subsp. lyrata]
Evalue: 1e-19 | Bitscore: 101
Identities = 70/203 (34%), Positives = 106/203 (52%), Gaps = 15/203 (7%)		 NCBI
Show Blast
AAF64449.1 glutathione S-transferase [Euphorbia esula]
Evalue: 1e-19 | Bitscore: 101
Identities = 62/202 (31%), Positives = 105/202 (52%), Gaps = 15/202 (7%)		 NCBI
Show Blast
XP_002967178.1 hypothetical protein SELMODRAFT_144252 [Selaginella moellendorffii]
Evalue: 2e-19 | Bitscore: 100
Identities = 75/250 (30%), Positives = 117/250 (47%), Gaps = 30/250 (12%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g01080
Redo Blast
CDS Length
792 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g01080
Redo Blast
Protein Length
264 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a