- Gene ID
- Bathy10g00480
- Locus
- Bathy10g00480
- Functional Description
- predicted protein
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_10
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- predicted protein
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
nucleus
- Molecular Function
-
1.
DNA binding
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR004333 |
Transcription factor, SBP-box |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| ABM67301.1 |
SBP-domain protein 7 [Physcomitrella patens]
Evalue: 5e-08 | Bitscore: 65
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%) |
NCBI |
Show Blast
|
| XP_002887647.1 |
hypothetical protein ARALYDRAFT_895541 [Arabidopsis lyrata subsp. lyrata]
Evalue: 5e-08 | Bitscore: 65
Identities = 40/123 (33%), Positives = 65/123 (53%), Gaps = 22/123 (18%) |
NCBI |
Show Blast
|
| XP_001779155.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-08 | Bitscore: 65
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%) |
NCBI |
Show Blast
|
| AAG51947.1 |
unknown protein; 70902-74753 [Arabidopsis thaliana]
Evalue: 9e-08 | Bitscore: 65
Identities = 40/123 (33%), Positives = 64/123 (52%), Gaps = 22/123 (18%) |
NCBI |
Show Blast
|
| NP_177784.6 |
transcription factor [Arabidopsis thaliana] sp|Q700C2.2|SPL16_ARATH RecName: Full=Squamosa promoter-binding-like protein 16; AltName:
Evalue: 1e-07 | Bitscore: 65
Identities = 40/123 (33%), Positives = 64/123 (52%), Gaps = 22/123 (18%) |
NCBI |
Show Blast
|
| ABO80946.1 |
SBP [Medicago truncatula]
Evalue: 2e-07 | Bitscore: 64
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 6/85 (7%) |
NCBI |
Show Blast
|
| Q700C2 |
Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2
Evalue: 1e-08 | Bitscore: 63
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 22/123 (17%) |
SwissP |
Show Blast
|
| NP_001149534.1 |
squamosa promoter-binding-like protein 11 [Zea mays]
Evalue: 2e-07 | Bitscore: 63
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%) |
NCBI |
Show Blast
|
| NP_001051808.1 |
Os03g0833300 [Oryza sativa Japonica Group] sp|Q75LH6.1|SPL6_ORYSJ RecName: Full=Squamosa promoter-binding-like protein 6
Evalue: 3e-07 | Bitscore: 63
Identities = 33/84 (39%), Positives = 45/84 (54%), Gaps = 5/84 (6%) |
NCBI |
Show Blast
|
| Q75LH6 |
Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1
Evalue: 2e-08 | Bitscore: 62
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 8/99 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| ABM67301.1 |
SBP-domain protein 7 [Physcomitrella patens]
Evalue: 5e-08 | Bitscore: 65
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%) |
NCBI |
Show Blast
|
| XP_002887647.1 |
hypothetical protein ARALYDRAFT_895541 [Arabidopsis lyrata subsp. lyrata]
Evalue: 5e-08 | Bitscore: 65
Identities = 40/123 (33%), Positives = 65/123 (53%), Gaps = 22/123 (18%) |
NCBI |
Show Blast
|
| XP_001779155.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-08 | Bitscore: 65
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%) |
NCBI |
Show Blast
|
| AAG51947.1 |
unknown protein; 70902-74753 [Arabidopsis thaliana]
Evalue: 9e-08 | Bitscore: 65
Identities = 40/123 (33%), Positives = 64/123 (52%), Gaps = 22/123 (18%) |
NCBI |
Show Blast
|
| NP_177784.6 |
transcription factor [Arabidopsis thaliana] sp|Q700C2.2|SPL16_ARATH RecName: Full=Squamosa promoter-binding-like protein 16; AltName:
Evalue: 1e-07 | Bitscore: 65
Identities = 40/123 (33%), Positives = 64/123 (52%), Gaps = 22/123 (18%) |
NCBI |
Show Blast
|
| ABO80946.1 |
SBP [Medicago truncatula]
Evalue: 2e-07 | Bitscore: 64
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 6/85 (7%) |
NCBI |
Show Blast
|
| NP_001149534.1 |
squamosa promoter-binding-like protein 11 [Zea mays]
Evalue: 2e-07 | Bitscore: 63
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%) |
NCBI |
Show Blast
|
| NP_001051808.1 |
Os03g0833300 [Oryza sativa Japonica Group] sp|Q75LH6.1|SPL6_ORYSJ RecName: Full=Squamosa promoter-binding-like protein 6
Evalue: 3e-07 | Bitscore: 63
Identities = 33/84 (39%), Positives = 45/84 (54%), Gaps = 5/84 (6%) |
NCBI |
Show Blast
|
| BAK01070.1 |
predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 5e-07 | Bitscore: 62
Identities = 38/102 (37%), Positives = 53/102 (52%), Gaps = 8/102 (8%) |
NCBI |
Show Blast
|
| XP_002299319.1 |
predicted protein [Populus trichocarpa]
Evalue: 6e-07 | Bitscore: 62
Identities = 27/66 (41%), Positives = 42/66 (64%), Gaps = 2/66 (3%) |
NCBI |
Show Blast
|
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q700C2 |
Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2
Evalue: 1e-08 | Bitscore: 63
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 22/123 (17%) |
SwissP |
Show Blast
|
| Q75LH6 |
Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1
Evalue: 2e-08 | Bitscore: 62
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 8/99 (8%) |
SwissP |
Show Blast
|
| Q8RY95 |
Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3
Evalue: 1e-07 | Bitscore: 60
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 20/128 (15%) |
SwissP |
Show Blast
|
| Q6Z8M8 |
Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1
Evalue: 2e-07 | Bitscore: 59
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 5/85 (5%) |
SwissP |
Show Blast
|
| A2YX04 |
Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1
Evalue: 2e-07 | Bitscore: 59
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 5/85 (5%) |
SwissP |
Show Blast
|
| Q8LFW6 |
Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2
Evalue: 5e-07 | Bitscore: 58
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%) |
SwissP |
Show Blast
|
| Q5Z818 |
Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1
Evalue: 5e-07 | Bitscore: 58
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 9/123 (7%) |
SwissP |
Show Blast
|
| Q7XT42 |
Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2
Evalue: 5e-07 | Bitscore: 58
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%) |
SwissP |
Show Blast
|
| A2YGR5 |
Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1
Evalue: 5e-07 | Bitscore: 58
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 9/123 (7%) |
SwissP |
Show Blast
|
| Q7EXZ2 |
Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica GN=SPL14 PE=2 SV=1
Evalue: 7e-07 | Bitscore: 57
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | SuperContig_8.clus290.Contig1 |
Support Model | Y |
More Info |
| Comment | EST is non-spliced and has no reliable strand information |
| Mapping Location | 72770..73461 |
Strand + |
| EST ID | SuperContig_8.clus290.Contig2 |
Support Model | Y |
More Info |
| Mapping Location | 73451..74866 |
Strand - |
| EST ID | SuperContig_8.clus213.Contig1 |
Support Model | Y |
More Info |
| Mapping Location | 74915..75934 |
Strand - |
| EST ID | SuperContig_8.clus458.Contig1 |
Support Model | Y |
More Info |
| Mapping Location | 75980..76907 |
Strand - |
| EST ID | SuperContig_8.clus477.Contig1 |
Support Model | Y |
More Info |
| Mapping Location | 76968..77436 |
Strand - |
|
