Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy10g00150
Locus
Bathy10g00150
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_10
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:3.10.20.90 no description Gene3D
IPR006577 UAS InterPro
G3DSA:1.10.8.10 no description Gene3D
IPR001012 UBX InterPro
PTHR23322 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003081433.1 Fas-associated factor 1-like protein (ISS) [Ostreococcus tauri]
Evalue: 9e-46 | Bitscore: 189
Identities = 151/391 (39%), Positives = 219/391 (56%), Gaps = 14/391 (4%)		 NCBI
Show Blast
XP_001419668.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-42 | Bitscore: 178
Identities = 129/313 (41%), Positives = 192/313 (61%), Gaps = 6/313 (2%)		 NCBI
Show Blast
XP_002504778.1 predicted protein [Micromonas sp. RCC299]
Evalue: 5e-42 | Bitscore: 177
Identities = 143/370 (39%), Positives = 204/370 (55%), Gaps = 28/370 (8%)		 NCBI
Show Blast
XP_002966922.1 hypothetical protein SELMODRAFT_63727 [Selaginella moellendorffii]
Evalue: 1e-34 | Bitscore: 152
Identities = 135/379 (36%), Positives = 204/379 (54%), Gaps = 17/379 (4%)		 NCBI
Show Blast
XP_001785845.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-34 | Bitscore: 151
Identities = 112/293 (38%), Positives = 168/293 (57%), Gaps = 5/293 (2%)		 NCBI
Show Blast
BAJ89712.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 3e-34 | Bitscore: 151
Identities = 123/302 (41%), Positives = 183/302 (61%), Gaps = 8/302 (3%)		 NCBI
Show Blast
XP_002961086.1 hypothetical protein SELMODRAFT_164130 [Selaginella moellendorffii]
Evalue: 3e-34 | Bitscore: 151
Identities = 135/387 (35%), Positives = 206/387 (53%), Gaps = 10/387 (3%)		 NCBI
Show Blast
NP_001137129.1 hypothetical protein LOC100217311 [Zea mays]
Evalue: 1e-33 | Bitscore: 149
Identities = 124/320 (39%), Positives = 186/320 (58%), Gaps = 6/320 (2%)		 NCBI
Show Blast
EAY79232.1 hypothetical protein OsI_34349 [Oryza sativa Indica Group]
Evalue: 6e-33 | Bitscore: 147
Identities = 121/302 (40%), Positives = 178/302 (59%), Gaps = 8/302 (3%)		 NCBI
Show Blast
AAG13433.1 unknown protein [Oryza sativa Japonica Group]
Evalue: 6e-33 | Bitscore: 147
Identities = 119/293 (41%), Positives = 174/293 (59%), Gaps = 4/293 (1%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy10g00150
Redo Blast
CDS Length
1542 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy10g00150
Redo Blast
Protein Length
514 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_8.clus273.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_8.clus273.Contig2 Support ModelY More Info