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Bathycoccus prasinos


Gene ID
Bathy09g03620
Locus
Bathy09g03620
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_09
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
PTHR24349 FAMILY NOT NAMED HMMPanther
IPR017441 Protein kinase, ATP binding site InterPro
IPR018247 EF-Hand 1, calcium-binding site InterPro
G3DSA:3.30.200.20 no description Gene3D
IPR002290 Serine/threonine-protein kinase domain InterPro
IPR011992 EF-hand-like domain InterPro
IPR002048 Calcium-binding EF-hand InterPro
IPR018248 EF-hand InterPro
IPR017442 Serine/threonine-protein kinase-like domain InterPro
IPR011009 Protein kinase-like domain InterPro
IPR008271 Serine/threonine-protein kinase, active site InterPro
IPR000719 Protein kinase, catalytic domain InterPro
IPR018249 EF-HAND 2 InterPro
G3DSA:1.10.510.10 no description Gene3D
IPR020635 Tyrosine-protein kinase, catalytic domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001416697.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 641
Identities = 297/465 (64%), Positives = 369/465 (79%), Gaps = 2/465 (0%)		 NCBI
Show Blast
XP_003078254.1 putative calcium dependent protein kinase (ISS) [Ostreococcus tauri]
Evalue: 8e-180 | Bitscore: 634
Identities = 297/485 (61%), Positives = 373/485 (77%), Gaps = 5/485 (1%)		 NCBI
Show Blast
XP_002499897.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-161 | Bitscore: 573
Identities = 269/455 (59%), Positives = 344/455 (76%), Gaps = 4/455 (1%)		 NCBI
Show Blast
XP_003055256.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-152 | Bitscore: 541
Identities = 261/488 (53%), Positives = 354/488 (73%), Gaps = 17/488 (3%)		 NCBI
Show Blast
ABV22565.1 calcium-dependent protein kinase [Physcomitrella patens]
Evalue: 5e-150 | Bitscore: 535
Identities = 258/490 (53%), Positives = 341/490 (70%), Gaps = 13/490 (3%)		 NCBI
Show Blast
XP_001781985.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-149 | Bitscore: 534
Identities = 255/471 (54%), Positives = 333/471 (71%), Gaps = 11/471 (2%)		 NCBI
Show Blast
XP_002983821.1 calcium dependent protein kinase 3 [Selaginella moellendorffii]
Evalue: 3e-147 | Bitscore: 526
Identities = 261/488 (53%), Positives = 329/488 (67%), Gaps = 10/488 (2%)		 NCBI
Show Blast
XP_002989102.1 calcium dependent protein kinase [Selaginella moellendorffii]
Evalue: 4e-147 | Bitscore: 526
Identities = 260/488 (53%), Positives = 329/488 (67%), Gaps = 10/488 (2%)		 NCBI
Show Blast
BAA81749.1 calcium-dependent protein kinase [Marchantia polymorpha]
Evalue: 2e-146 | Bitscore: 524
Identities = 259/472 (55%), Positives = 333/472 (71%), Gaps = 11/472 (2%)		 NCBI
Show Blast
NP_001044575.1 Os01g0808400 [Oryza sativa Japonica Group]
Evalue: 2e-146 | Bitscore: 524
Identities = 261/496 (53%), Positives = 337/496 (68%), Gaps = 11/496 (2%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy09g03620
Redo Blast
CDS Length
1506 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy09g03620
Redo Blast
Protein Length
502 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_7.clus422.Contig1 Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model