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Bathycoccus prasinos


Gene ID
Bathy09g02930
Locus
Bathy09g02930
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_09
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cullin-RING ubiquitin ligase complex

Molecular Function
1.
ubiquitin protein ligase binding

Biological Process
1.
ubiquitin-dependent protein catabolic process

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:1.20.1310.10 no description Gene3D
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding InterPro
IPR016158 Cullin homology InterPro
IPR019559 Cullin protein, neddylation domain InterPro
IPR001373 Cullin, N-terminal InterPro
PTHR11932 FAMILY NOT NAMED HMMPanther
G3DSA:4.10.1030.10 no description Gene3D

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002972958.1 hypothetical protein SELMODRAFT_98006 [Selaginella moellendorffii]
Evalue: 5e-83 | Bitscore: 314
Identities = 195/563 (35%), Positives = 300/563 (53%), Gaps = 106/563 (19%)		 NCBI
Show Blast
NP_174005.1 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase [Arabidopsis thaliana]
Evalue: 6e-82 | Bitscore: 311
Identities = 199/557 (36%), Positives = 300/557 (54%), Gaps = 106/557 (19%)		 NCBI
Show Blast
BAF02190.1 cullin 3-like protein [Arabidopsis thaliana]
Evalue: 9e-82 | Bitscore: 310
Identities = 199/557 (36%), Positives = 300/557 (54%), Gaps = 106/557 (19%)		 NCBI
Show Blast
ABR17308.1 unknown [Picea sitchensis]
Evalue: 9e-82 | Bitscore: 310
Identities = 197/551 (36%), Positives = 285/551 (52%), Gaps = 105/551 (19%)		 NCBI
Show Blast
CAC87839.1 cullin 3B [Arabidopsis thaliana]
Evalue: 1e-81 | Bitscore: 310
Identities = 196/556 (35%), Positives = 297/556 (53%), Gaps = 104/556 (19%)		 NCBI
Show Blast
NP_177125.3 CUL3B (CULLIN 3B); protein binding / ubiquitin-protein ligase [Arabidopsis thaliana]
Evalue: 2e-81 | Bitscore: 309
Identities = 196/556 (35%), Positives = 297/556 (53%), Gaps = 104/556 (19%)		 NCBI
Show Blast
XP_002499472.1 predicted protein [Micromonas sp. RCC299]
Evalue: 3e-81 | Bitscore: 308
Identities = 228/680 (34%), Positives = 329/680 (48%), Gaps = 143/680 (21%)		 NCBI
Show Blast
XP_001781780.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-81 | Bitscore: 306
Identities = 194/552 (35%), Positives = 291/552 (53%), Gaps = 106/552 (19%)		 NCBI
Show Blast
XP_002890627.1 ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis lyrata subsp. lyrata]
Evalue: 9e-81 | Bitscore: 306
Identities = 198/557 (36%), Positives = 299/557 (54%), Gaps = 106/557 (19%)		 NCBI
Show Blast
XP_002275251.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 2e-80 | Bitscore: 305
Identities = 196/563 (35%), Positives = 295/563 (52%), Gaps = 107/563 (19%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy09g02930
Redo Blast
CDS Length
3246 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy09g02930
Redo Blast
Protein Length
1082 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_7.clus540.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information