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Bathycoccus prasinos


Gene ID
Bathy09g01850
Locus
Bathy09g01850
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_09
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR011992 EF-hand-like domain InterPro
IPR013766 Thioredoxin domain InterPro
G3DSA:3.30.420.160 no description Gene3D
IPR005746 Thioredoxin InterPro
G3DSA:3.30.420.40 no description Gene3D
IPR018249 EF-HAND 2 InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003078102.1 Thioredoxin (ISS) [Ostreococcus tauri]
Evalue: 2e-122 | Bitscore: 444
Identities = 251/543 (46%), Positives = 345/543 (64%), Gaps = 41/543 (8%)		 NCBI
Show Blast
XP_003062693.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-114 | Bitscore: 417
Identities = 230/534 (43%), Positives = 336/534 (63%), Gaps = 35/534 (7%)		 NCBI
Show Blast
XP_002505907.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-43 | Bitscore: 181
Identities = 102/249 (41%), Positives = 157/249 (63%), Gaps = 22/249 (9%)		 NCBI
Show Blast
XP_001416622.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-24 | Bitscore: 119
Identities = 53/100 (53%), Positives = 78/100 (78%), Gaps = 3/100 (3%)		 NCBI
Show Blast
XP_003077953.1 Thioredoxin (ISS) [Ostreococcus tauri]
Evalue: 4e-22 | Bitscore: 110
Identities = 124/511 (24%), Positives = 216/511 (42%), Gaps = 91/511 (18%)		 NCBI
Show Blast
XP_003060688.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-17 | Bitscore: 94
Identities = 102/417 (24%), Positives = 175/417 (42%), Gaps = 59/417 (14%)		 NCBI
Show Blast
XP_003080382.1 Thioredoxin (ISS) [Ostreococcus tauri]
Evalue: 2e-14 | Bitscore: 85
Identities = 59/226 (26%), Positives = 115/226 (51%), Gaps = 12/226 (5%)		 NCBI
Show Blast
XP_001418952.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-14 | Bitscore: 83
Identities = 76/305 (25%), Positives = 147/305 (48%), Gaps = 22/305 (7%)		 NCBI
Show Blast
ZP_06474553.1 Polyphosphate--glucose phosphotransferase [Frankia symbiont of Datisca glomerata]
Evalue: 2e-10 | Bitscore: 72
Identities = 50/180 (28%), Positives = 82/180 (46%), Gaps = 20/180 (11%)		 NCBI
Show Blast
EFN53866.1 hypothetical protein CHLNCDRAFT_135979 [Chlorella variabilis]
Evalue: 5e-10 | Bitscore: 71
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 7/105 (7%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy09g01850
Redo Blast
CDS Length
1725 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy09g01850
Redo Blast
Protein Length
575 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_7.clus312.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information