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Bathycoccus prasinos


Gene ID
Bathy09g01730
Locus
Bathy09g01730
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_09
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
PTHR14095 FAMILY NOT NAMED HMMPanther
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
SSF47473 EF-hand superfamily
PF08616 SPB_interacting HMMPfam

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002500124.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-134 | Bitscore: 485
Identities = 239/454 (53%), Positives = 306/454 (67%), Gaps = 31/454 (7%)		 NCBI
Show Blast
XP_003057811.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-132 | Bitscore: 478
Identities = 240/439 (55%), Positives = 298/439 (68%), Gaps = 31/439 (7%)		 NCBI
Show Blast
XP_001418951.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-127 | Bitscore: 460
Identities = 225/445 (51%), Positives = 292/445 (66%), Gaps = 45/445 (10%)		 NCBI
Show Blast
XP_001772199.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 4e-126 | Bitscore: 457
Identities = 231/437 (53%), Positives = 291/437 (67%), Gaps = 45/437 (10%)		 NCBI
Show Blast
XP_003080381.1 protein phosphatase 2A 62 kDa B'' regulatory subunit (ISS) [Ostreococcus tauri]
Evalue: 5e-126 | Bitscore: 456
Identities = 221/415 (53%), Positives = 281/415 (68%), Gaps = 44/415 (11%)		 NCBI
Show Blast
XP_001752983.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-125 | Bitscore: 454
Identities = 232/437 (53%), Positives = 291/437 (67%), Gaps = 45/437 (10%)		 NCBI
Show Blast
XP_002319110.1 predicted protein [Populus trichocarpa]
Evalue: 4e-123 | Bitscore: 446
Identities = 223/437 (51%), Positives = 293/437 (67%), Gaps = 45/437 (10%)		 NCBI
Show Blast
XP_002272394.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-122 | Bitscore: 443
Identities = 220/450 (49%), Positives = 295/450 (66%), Gaps = 50/450 (11%)		 NCBI
Show Blast
CBI37142.3 unnamed protein product [Vitis vinifera]
Evalue: 5e-122 | Bitscore: 443
Identities = 220/450 (49%), Positives = 295/450 (66%), Gaps = 50/450 (11%)		 NCBI
Show Blast
XP_002306866.1 predicted protein [Populus trichocarpa]
Evalue: 3e-121 | Bitscore: 441
Identities = 223/451 (49%), Positives = 299/451 (66%), Gaps = 50/451 (11%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy09g01730
Redo Blast
CDS Length
2127 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy09g01730
Redo Blast
Protein Length
709 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_7.clus420.Contig1 Support ModelY More Info