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Bathycoccus prasinos


Gene ID
Bathy09g01380
Locus
Bathy09g01380
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_09
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR10891 EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN HMMPanther
IPR002048 Calcium-binding EF-hand InterPro
IPR011992 EF-hand-like domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001422109.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-34 | Bitscore: 148
Identities = 74/168 (44%), Positives = 109/168 (65%), Gaps = 7/168 (4%)		 NCBI
Show Blast
XP_003064500.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-29 | Bitscore: 133
Identities = 65/165 (39%), Positives = 104/165 (63%), Gaps = 7/165 (4%)		 NCBI
Show Blast
XP_003084116.1 calmodulin (ISS) [Ostreococcus tauri]
Evalue: 2e-27 | Bitscore: 127
Identities = 63/147 (43%), Positives = 97/147 (66%), Gaps = 0/147 (0%)		 NCBI
Show Blast
XP_002501086.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-22 | Bitscore: 111
Identities = 55/140 (39%), Positives = 91/140 (65%), Gaps = 0/140 (0%)		 NCBI
Show Blast
ABK21927.1 unknown [Picea sitchensis]
Evalue: 3e-21 | Bitscore: 106
Identities = 55/145 (38%), Positives = 89/145 (61%), Gaps = 0/145 (0%)		 NCBI
Show Blast
XP_001369763.1 PREDICTED: similar to calmodulin 2 [Monodelphis domestica]
Evalue: 1e-20 | Bitscore: 104
Identities = 58/161 (36%), Positives = 98/161 (61%), Gaps = 2/161 (1%)		 NCBI
Show Blast
XP_001373765.1 PREDICTED: hypothetical protein [Monodelphis domestica]
Evalue: 5e-20 | Bitscore: 102
Identities = 52/150 (35%), Positives = 90/150 (60%), Gaps = 0/150 (0%)		 NCBI
Show Blast
XP_001849785.1 calmodulin [Culex quinquefasciatus]
Evalue: 5e-20 | Bitscore: 102
Identities = 53/149 (36%), Positives = 90/149 (60%), Gaps = 0/149 (0%)		 NCBI
Show Blast
XP_641695.1 hypothetical protein DDB_G0279407 [Dictyostelium discoideum AX4] sp|P02599.3|CALM_DICDI RecName: Full=Calmodulin; Short=CaM
Evalue: 7e-20 | Bitscore: 102
Identities = 52/149 (35%), Positives = 89/149 (60%), Gaps = 0/149 (0%)		 NCBI
Show Blast
O96102 Calmodulin OS=Physarum polycephalum PE=2 SV=3
Evalue: 6e-20 | Bitscore: 98
Identities = 54/143 (37%), Positives = 88/143 (61%)		 SwissP
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy09g01380
Redo Blast
CDS Length
879 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy09g01380
Redo Blast
Protein Length
293 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_7.clus389.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information