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Bathycoccus prasinos


Gene ID
Bathy09g01220
Locus
Bathy09g01220
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_09
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR016639 Glutathione S-transferase, predicted InterPro
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001692860.1 predicted protein [Chlamydomonas reinhardtii]
Evalue: 1e-72 | Bitscore: 277
Identities = 157/347 (45%), Positives = 211/347 (61%), Gaps = 24/347 (7%)		 NCBI
Show Blast
XP_002504106.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-71 | Bitscore: 273
Identities = 166/344 (48%), Positives = 207/344 (60%), Gaps = 28/344 (8%)		 NCBI
Show Blast
XP_001418372.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 7e-69 | Bitscore: 265
Identities = 163/342 (48%), Positives = 208/342 (61%), Gaps = 26/342 (8%)		 NCBI
Show Blast
XP_003079693.1 Predicted glutathione S-transferase (ISS) [Ostreococcus tauri]
Evalue: 8e-68 | Bitscore: 262
Identities = 163/354 (46%), Positives = 217/354 (61%), Gaps = 30/354 (8%)		 NCBI
Show Blast
NP_001146787.1 hypothetical protein LOC100280390 [Zea mays]
Evalue: 2e-65 | Bitscore: 254
Identities = 155/339 (46%), Positives = 197/339 (58%), Gaps = 38/339 (11%)		 NCBI
Show Blast
NP_193723.3 unknown protein [Arabidopsis thaliana]
Evalue: 2e-65 | Bitscore: 253
Identities = 148/341 (43%), Positives = 194/341 (57%), Gaps = 40/341 (12%)		 NCBI
Show Blast
AAK44087.2 unknown protein [Arabidopsis thaliana]
Evalue: 3e-65 | Bitscore: 253
Identities = 148/341 (43%), Positives = 194/341 (57%), Gaps = 40/341 (12%)		 NCBI
Show Blast
XP_002865303.1 predicted protein [Arabidopsis lyrata subsp. lyrata]
Evalue: 4e-65 | Bitscore: 253
Identities = 151/341 (44%), Positives = 192/341 (56%), Gaps = 40/341 (12%)		 NCBI
Show Blast
XP_002524149.1 glutathione transferase, putative [Ricinus communis]
Evalue: 4e-65 | Bitscore: 253
Identities = 146/352 (41%), Positives = 201/352 (57%), Gaps = 45/352 (13%)		 NCBI
Show Blast
ACG32999.1 glutathione S-transferase, C-terminal-like [Zea mays]
Evalue: 4e-65 | Bitscore: 253
Identities = 155/339 (46%), Positives = 197/339 (58%), Gaps = 38/339 (11%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy09g01220
Redo Blast
CDS Length
1092 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy09g01220
Redo Blast
Protein Length
364 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_7.clus98.Contig1 Support ModelY More Info