Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy08g04430
Locus
Bathy08g04430
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR011993 Pleckstrin homology-type InterPro
IPR018249 EF-HAND 2 InterPro
PTHR10891 EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN HMMPanther
IPR011992 EF-hand-like domain InterPro
IPR022099 Protein of unknown function DUF3638 InterPro
SSF47473 EF-hand superfamily
IPR022105 Protein of unknown function DUF3645 InterPro
IPR001849 Pleckstrin homology domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001417362.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 3991
Identities = 2399/4856 (49%), Positives = 3152/4856 (65%), Gaps = 362/4856 (7%)
NCBI
Show Blast
XP_003079022.1 unnamed protein product [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 2222
Identities = 1298/2561 (51%), Positives = 1721/2561 (67%), Gaps = 166/2561 (6%)
NCBI
Show Blast
XP_003079021.1 unnamed protein product [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1558
Identities = 997/2192 (45%), Positives = 1287/2192 (59%), Gaps = 289/2192 (13%)
NCBI
Show Blast
XP_003060771.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 1436
Identities = 862/1556 (55%), Positives = 1073/1556 (69%), Gaps = 111/1556 (7%)
NCBI
Show Blast
XP_002504836.1 predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 1290
Identities = 900/2075 (43%), Positives = 1174/2075 (57%), Gaps = 256/2075 (12%)
NCBI
Show Blast
EGB05765.1 hypothetical protein AURANDRAFT_72156 [Aureococcus anophagefferens]
Evalue: 0.0 | Bitscore: 782
Identities = 563/1551 (36%), Positives = 797/1551 (51%), Gaps = 207/1551 (13%)
NCBI
Show Blast
CBN75085.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 0.0 | Bitscore: 738
Identities = 418/948 (44%), Positives = 592/948 (62%), Gaps = 35/948 (4%)
NCBI
Show Blast
XP_001609190.1 hypothetical protein [Babesia bovis T2Bo]
Evalue: 1e-164 | Bitscore: 587
Identities = 354/970 (36%), Positives = 541/970 (56%), Gaps = 88/970 (9%)
NCBI
Show Blast
EFZ29463.1 hypothetical protein, conserved [Trypanosoma cruzi]
Evalue: 1e-157 | Bitscore: 565
Identities = 411/1231 (33%), Positives = 620/1231 (50%), Gaps = 202/1231 (16%)
NCBI
Show Blast
XP_806583.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
Evalue: 9e-155 | Bitscore: 555
Identities = 365/992 (37%), Positives = 537/992 (54%), Gaps = 134/992 (14%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g04430
Redo Blast
CDS Length
14538 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g04430
Redo Blast
Protein Length
4846 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus770.Contig1 Support ModelY More Info