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Bathycoccus prasinos


Gene ID
Bathy08g04370
Locus
Bathy08g04370
Functional Description
alanyl-tRNA synthetase
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
alanyl-tRNA synthetase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain InterPro
IPR002318 Alanyl-tRNA synthetase, class IIc InterPro
IPR012335 Thioredoxin fold InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
PTHR11777 FAMILY NOT NAMED HMMPanther
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR018165 Alanyl-tRNA synthetase, class IIc, core domain InterPro
IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal InterPro
IPR012947 Threonyl/alanyl tRNA synthetase, SAD InterPro
IPR003156 Phosphoesterase, DHHA1 InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
G3DSA:3.30.930.10 no description Gene3D
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003079014.1 SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1271
Identities = 691/1181 (59%), Positives = 850/1181 (72%), Gaps = 39/1181 (3%)
NCBI
Show Blast
XP_001417607.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1085
Identities = 573/933 (61%), Positives = 689/933 (74%), Gaps = 10/933 (1%)
NCBI
Show Blast
XP_002504833.1 alanyl-tRNA synthetase [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 1051
Identities = 580/914 (63%), Positives = 685/914 (75%), Gaps = 13/914 (1%)
NCBI
Show Blast
XP_003060777.1 alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 1043
Identities = 566/943 (60%), Positives = 682/943 (72%), Gaps = 28/943 (3%)
NCBI
Show Blast
XP_002277341.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 911
Identities = 511/935 (55%), Positives = 649/935 (69%), Gaps = 17/935 (2%)
NCBI
Show Blast
EEC66648.1 hypothetical protein OsI_32912 [Oryza sativa Indica Group]
Evalue: 0.0 | Bitscore: 904
Identities = 507/937 (54%), Positives = 651/937 (69%), Gaps = 17/937 (2%)
NCBI
Show Blast
NP_001064254.1 Os10g0182000 [Oryza sativa Japonica Group]
Evalue: 0.0 | Bitscore: 902
Identities = 508/934 (54%), Positives = 651/934 (70%), Gaps = 17/934 (2%)
NCBI
Show Blast
XP_002531134.1 alanyl-tRNA synthetase, putative [Ricinus communis]
Evalue: 0.0 | Bitscore: 902
Identities = 498/927 (54%), Positives = 643/927 (69%), Gaps = 16/927 (2%)
NCBI
Show Blast
CBI26461.3 unnamed protein product [Vitis vinifera]
Evalue: 0.0 | Bitscore: 894
Identities = 515/953 (54%), Positives = 646/953 (68%), Gaps = 25/953 (3%)
NCBI
Show Blast
XP_001773539.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 892
Identities = 503/934 (54%), Positives = 654/934 (70%), Gaps = 21/934 (2%)
NCBI
Show Blast

Gene Structure 

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Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g04370
Redo Blast
CDS Length
3585 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g04370
Redo Blast
Protein Length
1195 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus731.Contig1 Support ModelY More Info
EST IDSuperContig_6.clus381.Contig1 Support ModelY More Info
EST IDSuperContig_6.clus525.Contig1 Support ModelY More Info
EST IDSuperContig_6.clus610.Contig1 Support ModelY More Info